PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_80.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 205aa MW: 23909.7 Da PI: 7.777 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 20 | 72 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t+eq++ Le+ F n+++ e++ +LA++lgL+ r+V +W+qN+Ra++k evm.model.supercontig_80.1 20 KKRLTHEQVRLLERSFCGNKKLEPEMKVQLASQLGLPPRRVAIWYQNKRARWK 72 4579************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 107.1 | 1.3e-34 | 19 | 108 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 +k+rl++eqv+lLE+sF ++kLepe Kv+la++Lgl pr va+W+qn+RAR+kt+ lE+dy++L+ ++++ +e+++Le++v evm.model.supercontig_80.1 19 NKKRLTHEQVRLLERSFCGNKKLEPEMKVQLASQLGLPPRRVAIWYQNKRARWKTQSLEVDYNTLQVKLENALAEKRQLERDV 101 79********************************************************************************* PP HD-ZIP_I/II 85 eeLreel 91 + L+ el evm.model.supercontig_80.1 102 RLLQVEL 108 *999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-17 | 8 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.916 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.9E-16 | 16 | 78 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.0E-16 | 20 | 72 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.13E-14 | 20 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-19 | 21 | 81 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 49 | 72 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MEYFHGTQQN PKQFGKLHNK KRLTHEQVRL LERSFCGNKK LEPEMKVQLA SQLGLPPRRV 60 AIWYQNKRAR WKTQSLEVDY NTLQVKLENA LAEKRQLERD VRLLQVELGK AQEMLFEFSH 120 HRQQQQQHQL MQSHHHHHHV YSNPDHHNNN GYTVMVNNCS TSNSCEDQGF SSSFHHDQDV 180 VSDEDLRLDE LYACLIGANG SSST* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_80.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021894742.1 | 1e-152 | homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A067LF56 | 4e-60 | A0A067LF56_JATCU; Uncharacterized protein | ||||
STRING | evm.model.supercontig_80.1 | 1e-152 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12107 | 26 | 32 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 2e-37 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_80.1 |