PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_8.295 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GRAS | ||||||||
Protein Properties | Length: 353aa MW: 38594 Da PI: 6.2854 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 362.2 | 7.2e-111 | 2 | 349 | 15 | 374 |
GRAS 15 gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++l+ a+ lL ++sel+sp g++ +R+ ayf+ AL+ar+ +s+ ++y+ l++++ + ++s + ++al+ ++ +sP++kfsh+ evm.model.supercontig_8.295 2 DNLNDATDLLPEISELSSPFGSSPERVGAYFAHALQARVISSCLGTYSPLTTKTVTLTQSHRIFNALQSYNSISPLVKFSHF 83 68999***************************************************99************************ PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 taNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasR+++ s+RiTg+gs s+e le+tg+rLa+fA++lg+pfef evm.model.supercontig_8.295 84 TANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRSRKVRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEF 161 *****************************************************....9************************ PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260 ++l k + +l++L v+p+Ea++V++++ h l+d ++s +L+l+ l+Pk++++veq+++h ++sFl rf+ea evm.model.supercontig_8.295 162 QPLEGKIGNIADLSQLGVRPNEAVVVHWMH--HCLYDVTGSDLG----TLRLLALLRPKLITIVEQDLSH-GGSFLGRFVEA 236 **988888888******************9..888888888888....**********************.789******** PP GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 l+yysalfd+l +l+ +s er++vE++l+g ei+n+va g +r+ + + +e+W + l ++GF+pv+l+ + a+qa+lll evm.model.supercontig_8.295 237 LHYYSALFDALGDGLGVDSVERHTVEQQLFGCEIRNIVAVGGPKRTGEVK-VERWGDELIRVGFRPVSLGGNPAAQASLLLG 317 ********************************************998887.9****************************** PP GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++++gy++ ee+g+l lgWkd +L+++SaW+ evm.model.supercontig_8.295 318 MFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 349 *******************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 54.512 | 1 | 329 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-108 | 2 | 349 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MDNLNDATDL LPEISELSSP FGSSPERVGA YFAHALQARV ISSCLGTYSP LTTKTVTLTQ 60 SHRIFNALQS YNSISPLVKF SHFTANQAIF QALDGEDRVH VIDLDIMQGL QWPGLFHILA 120 SRSRKVRSMR ITGFGSSSEL LESTGRRLAD FASSLGLPFE FQPLEGKIGN IADLSQLGVR 180 PNEAVVVHWM HHCLYDVTGS DLGTLRLLAL LRPKLITIVE QDLSHGGSFL GRFVEALHYY 240 SALFDALGDG LGVDSVERHT VEQQLFGCEI RNIVAVGGPK RTGEVKVERW GDELIRVGFR 300 PVSLGGNPAA QASLLLGMFP WKGYTLVEEN GCLKLGWKDL SLLTASAWQP SD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-160 | 2 | 350 | 33 | 380 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_8.295 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021907302.1 | 0.0 | scarecrow-like protein 23 | ||||
Swissprot | Q9FHZ1 | 0.0 | SCL23_ARATH; Scarecrow-like protein 23 | ||||
TrEMBL | A0A061DTB2 | 0.0 | A0A061DTB2_THECC; SCL domain class transcription factor | ||||
STRING | evm.model.supercontig_8.295 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12512 | 26 | 31 | Representative plant | OGRP2183 | 14 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 1e-178 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_8.295 |
Publications ? help Back to Top | |||
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