PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_8.295
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 353aa    MW: 38594 Da    PI: 6.2854
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_8.295genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.27.2e-111234915374
                         GRAS  15 gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                                  ++l+ a+ lL ++sel+sp g++ +R+ ayf+ AL+ar+ +s+ ++y+ l++++ + ++s + ++al+ ++ +sP++kfsh+
  evm.model.supercontig_8.295   2 DNLNDATDLLPEISELSSPFGSSPERVGAYFAHALQARVISSCLGTYSPLTTKTVTLTQSHRIFNALQSYNSISPLVKFSHF 83 
                                  68999***************************************************99************************ PP

                         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                                  taNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef
  evm.model.supercontig_8.295  84 TANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRSRKVRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEF 161
                                  *****************************************************....9************************ PP

                         GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                                  ++l  k  +  +l++L v+p+Ea++V++++  h l+d ++s       +L+l+  l+Pk++++veq+++h ++sFl rf+ea
  evm.model.supercontig_8.295 162 QPLEGKIGNIADLSQLGVRPNEAVVVHWMH--HCLYDVTGSDLG----TLRLLALLRPKLITIVEQDLSH-GGSFLGRFVEA 236
                                  **988888888******************9..888888888888....**********************.789******** PP

                         GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                                  l+yysalfd+l  +l+ +s er++vE++l+g ei+n+va  g +r+ + + +e+W + l ++GF+pv+l+ + a+qa+lll 
  evm.model.supercontig_8.295 237 LHYYSALFDALGDGLGVDSVERHTVEQQLFGCEIRNIVAVGGPKRTGEVK-VERWGDELIRVGFRPVSLGGNPAAQASLLLG 317
                                  ********************************************998887.9****************************** PP

                         GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                  +++++gy++ ee+g+l lgWkd +L+++SaW+
  evm.model.supercontig_8.295 318 MFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 349
                                  *******************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.5121329IPR005202Transcription factor GRAS
PfamPF035142.5E-1082349IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDNLNDATDL LPEISELSSP FGSSPERVGA YFAHALQARV ISSCLGTYSP LTTKTVTLTQ  60
SHRIFNALQS YNSISPLVKF SHFTANQAIF QALDGEDRVH VIDLDIMQGL QWPGLFHILA  120
SRSRKVRSMR ITGFGSSSEL LESTGRRLAD FASSLGLPFE FQPLEGKIGN IADLSQLGVR  180
PNEAVVVHWM HHCLYDVTGS DLGTLRLLAL LRPKLITIVE QDLSHGGSFL GRFVEALHYY  240
SALFDALGDG LGVDSVERHT VEQQLFGCEI RNIVAVGGPK RTGEVKVERW GDELIRVGFR  300
PVSLGGNPAA QASLLLGMFP WKGYTLVEEN GCLKLGWKDL SLLTASAWQP SD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-160235033380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_8.295
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907302.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A061DTB20.0A0A061DTB2_THECC; SCL domain class transcription factor
STRINGevm.model.supercontig_8.2950.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Representative plantOGRP21831437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-178GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]