PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_8.199
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 605aa    MW: 65816.3 Da    PI: 7.468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_8.199genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH491.1e-15368414455
                                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  evm.model.supercontig_8.199 368 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 414
                                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-20361422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-20362429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-16367418No hitNo description
PfamPF000103.8E-13368414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MRPPSSPSHP LPRLINPLES SRSLRRMNHY VPDFEIDDDY SIPLASGLPC PRKSSMADDD  60
IMELLWHNGQ VVMHSQTQRP PKKSPPSKYD EAVLPGNQST VMEIQPPLLH NHQHHQHQHQ  120
QQQQSTTDHL FMQEDEMTSW LHYPLQDTNF EGDLCADLLY PSPCVTSTST SASVPHPVRA  180
AQVPAVATAS RPPIAPARKT ELETRVQNFA HFSRHKARVE SVPSSSKSVV KELTVVDSSD  240
THAAAGPESG TSDAIRSTER ASGGNSLCRT ISGPAAVGTS SAAPGVNGGS SAGKEPLTCE  300
GTVSSSPGCS SASADPPQKP AAEDRKRKGR EMDDIESGHS EDVDFESADT KKQARGSTST  360
KRSRAAEVHN LSERRRRDRI NEKMRALQEL IPRCNKSDKA SMLDEAIEYL KSLQLQVQMM  420
SMGCGLVPMM FPGVQQYIPP MGMGVGMGMG MEMGMSRPVM PFPNVLAGSA LPAPAAAAHL  480
GPRFPMPAFQ MPPVPVPGPS RNQATSQSDP MVNSFSMQNP NQPRLPSFVD PYQQYLGLPQ  540
MQLPPVQNQA VSQPSTSKEA DNLENPQSGL SLVEVSSMLR MNGYLPVKFC SVRRQPQPGR  600
SFFK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372377ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_8.199
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907160.10.0transcription factor PIF1-like isoform X1
TrEMBLA0A2I4GA540.0A0A2I4GA54_JUGRE; transcription factor PIF1-like
STRINGevm.model.supercontig_8.1990.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71082643
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.32e-76phytochrome interacting factor 3-like 5