PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_798.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 317aa    MW: 36269.1 Da    PI: 5.0898
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_798.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-173380148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 rg+WT eEd ll +++ ++G g+W+  a++ g++Rt+k+c++rw++yl
  evm.model.supercontig_798.1 33 RGPWTLEEDTLLTHYISRHGEGRWNMLAKCAGLKRTGKSCRLRWLNYL 80
                                 89********************************************97 PP
2Myb_DNA-binding52.51.1e-1686129146
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                  rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  evm.model.supercontig_798.1  86 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 129
                                  7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1652880IPR017930Myb domain
SuperFamilySSF466897.86E-3131127IPR009057Homeodomain-like
SMARTSM007179.6E-153282IPR001005SANT/Myb domain
PfamPF002492.0E-153380IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-233487IPR009057Homeodomain-like
CDDcd001671.42E-103580No hitNo description
PROSITE patternPS0017504857IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.75181135IPR017930Myb domain
SMARTSM007172.7E-1585133IPR001005SANT/Myb domain
PfamPF002491.1E-1586129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2388134IPR009057Homeodomain-like
CDDcd001676.65E-1190129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MMRSAAADQT TSSNVKMEFI SNEEDSSSDQ LRRGPWTLEE DTLLTHYISR HGEGRWNMLA  60
KCAGLKRTGK SCRLRWLNYL KPDIKRGNLT PQEQLLILEL HSKWGNRWSK IAQHLPGRTD  120
NEIKNYWRTR VQKQARQLNI ESDSKRFLDA VRCFWMPRLI QKMEQTSSSS SSSTKIELSF  180
PSSHQSSSSF PNFPSDNSSS IASSSISSPK IMTENSNHQI EDSNLSSVQS DEQFLQQYLG  240
CQQFDYSNVY GNNYSQVGEE GNNYYEMEQG YAMSAATGNY EVLAPTECQM ADGGWVIDDD  300
MADAFWNMDD IWQFRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24311355108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_798.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4345592e-32AB434559.1 Fagus crenata FcMYBS14 mRNA for transcription factor MYBS14, partial cds.
GenBankAB4345932e-32AB434593.1 Fagus crenata FcMYBC1 mRNA for transcription factor MYBC1, partial cds.
GenBankAB4346072e-32AB434607.1 Fagus crenata FcMYBD2 mRNA for transcription factor MYBD2, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021900849.10.0transcription factor MYB62-like
SwissprotQ9C9G75e-98MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A061ECW51e-115A0A061ECW5_THECC; Myb domain protein 62, putative
STRINGevm.model.supercontig_798.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-88myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]