PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_78.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GATA | ||||||||
Protein Properties | Length: 346aa MW: 38228.6 Da PI: 6.6391 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.2 | 9.7e-18 | 236 | 270 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l evm.model.supercontig_78.7 236 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 270 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 4.6E-81 | 5 | 326 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 12.36 | 230 | 266 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.0E-17 | 230 | 280 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-16 | 232 | 294 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.6E-14 | 233 | 268 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.55E-14 | 235 | 282 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 236 | 261 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.3E-15 | 236 | 270 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MEAPEFLQPS YCSQPNGADH FIVEDLLDFA NIDAAFDSLP GSSTDSTVTL VDSCNSSSFS 60 GSEPNFSADI AGHRNFTDAN LSADLCVPYD DVAELEWLSN FVEESFSSYD LQKLQLTCGM 120 KTRPEESSET QPNRTITTTS NAFINHNNNP MFHPDVSVPA KARSKRSRAA PCNWASRLMV 180 LSPTTSYSSE PEIVVQPPPP PPTQPTTGKK TVKGAAPRKK ETGDADAGGN ADGRRCLHCA 240 TDKTPQWRTG PMGPKTLCNA CGVRYKSGRL VPEYRPAASP TFVLTKHSNS HRKVMELRRQ 300 KELLRAQQQQ QQQFMHHHQN MMFDVSNGDD YLIHQHIGPD FRQLI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00530 | DAP | Transfer from AT5G25830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_78.7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021894930.1 | 0.0 | GATA transcription factor 12 | ||||
Swissprot | P69781 | 1e-101 | GAT12_ARATH; GATA transcription factor 12 | ||||
TrEMBL | A0A1Q3BBZ1 | 1e-168 | A0A1Q3BBZ1_CEPFO; GATA transcription factor | ||||
STRING | evm.model.supercontig_78.7 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6625 | 26 | 44 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 5e-81 | GATA transcription factor 12 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_78.7 |
Publications ? help Back to Top | |||
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