PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_77.65
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family STAT
Protein Properties Length: 662aa    MW: 74931.9 Da    PI: 5.4429
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_77.65genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT204.11.2e-632223431122
                         STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrL 82 
                                  ld++l+na+gq+v+k++evvasLlyadsg++vek++dae+pLL+sydG+ef+s drp+kllrGrasfklkisqLsskcdnrL
  evm.model.supercontig_77.65 222 LDLILSNAIGQTVTKEMEVVASLLYADSGTPVEKTGDAEPPLLASYDGIEFASGDRPSKLLRGRASFKLKISQLSSKCDNRL 303
                                  79******************************************************************************** PP

                         STAT  83 frikfeipklkkypfleavskpirCisrsrntrsssltkk 122
                                  f+ikf+i+klk ypf+e++s+pirCisrsrntr++++++k
  evm.model.supercontig_77.65 304 FCIKFQILKLKGYPFFEVLSNPIRCISRSRNTRTATVIWK 343
                                  ***********************************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498991.42E-825169IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.104.6E-6588645IPR000980SH2 domain
SuperFamilySSF555501.09E-7589652IPR000980SH2 domain
PROSITE profilePS500019.841594661IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MAGVIESEKY CLLKDFSVDV EVEDEGSFSL CFWVYLLNST TFPATIIRQV HMDMSVSAPF  60
LVLNENKMMM LLPLTLLHRE APDPGNTASW TEVPNVPMKI EFPLEKWIHV GCEVSRNFVR  120
LHIDGDIVGE QFLSSLLNKD SNPDFPRKMT LFSVGGDGYS VQGYIYNAKV VRSRIYLKEH  180
YVEDPPLHLS IDNSSTSEIE VDSDGVWSIV GGKASCRRIF SLDLILSNAI GQTVTKEMEV  240
VASLLYADSG TPVEKTGDAE PPLLASYDGI EFASGDRPSK LLRGRASFKL KISQLSSKCD  300
NRLFCIKFQI LKLKGYPFFE VLSNPIRCIS RSRNTRTATV IWKRTTSASH LLNETQSSEA  360
TPTPSLKRCR LGEERISIVE RPEEECNSYG CTAKQNGNAY DSRLEERPNN LEEAENSSSD  420
SESTEVRDPA FRSMSSSRNP ISDLAIFKYC LGRLTDRSLL LKEIVTNASD TELFDFADQV  480
SLFSGCSHHS YQIHMAKRLI AEGEKAWNSI SENNHQVHWE NVVFEIEEQF MKISCCNTRS  540
LTQQDLELLR RIAGCHDYVV QENFERMWCW LYPVAYTLSR DWINAMWNSA SPKWIEGFVT  600
KEEAENSLQG PRGLQEPGTF ILRFPTSRSW PHPDAGSLVV TYVGRDFALH HRLLSLDCLF  660
R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_77.65
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895061.10.0uncharacterized protein LOC110812561 isoform X1
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLA0A061F8920.0A0A061F892_THECC; SH2 domain protein A, putative isoform 2
STRINGevm.model.supercontig_77.650.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Representative plantOGRP59411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]