PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_77.65 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | STAT | ||||||||
Protein Properties | Length: 662aa MW: 74931.9 Da PI: 5.4429 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 204.1 | 1.2e-63 | 222 | 343 | 1 | 122 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrL 82 ld++l+na+gq+v+k++evvasLlyadsg++vek++dae+pLL+sydG+ef+s drp+kllrGrasfklkisqLsskcdnrL evm.model.supercontig_77.65 222 LDLILSNAIGQTVTKEMEVVASLLYADSGTPVEKTGDAEPPLLASYDGIEFASGDRPSKLLRGRASFKLKISQLSSKCDNRL 303 79******************************************************************************** PP STAT 83 frikfeipklkkypfleavskpirCisrsrntrsssltkk 122 f+ikf+i+klk ypf+e++s+pirCisrsrntr++++++k evm.model.supercontig_77.65 304 FCIKFQILKLKGYPFFEVLSNPIRCISRSRNTRTATVIWK 343 ***********************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF49899 | 1.42E-8 | 25 | 169 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Gene3D | G3DSA:3.30.505.10 | 4.6E-6 | 588 | 645 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 1.09E-7 | 589 | 652 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 9.841 | 594 | 661 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MAGVIESEKY CLLKDFSVDV EVEDEGSFSL CFWVYLLNST TFPATIIRQV HMDMSVSAPF 60 LVLNENKMMM LLPLTLLHRE APDPGNTASW TEVPNVPMKI EFPLEKWIHV GCEVSRNFVR 120 LHIDGDIVGE QFLSSLLNKD SNPDFPRKMT LFSVGGDGYS VQGYIYNAKV VRSRIYLKEH 180 YVEDPPLHLS IDNSSTSEIE VDSDGVWSIV GGKASCRRIF SLDLILSNAI GQTVTKEMEV 240 VASLLYADSG TPVEKTGDAE PPLLASYDGI EFASGDRPSK LLRGRASFKL KISQLSSKCD 300 NRLFCIKFQI LKLKGYPFFE VLSNPIRCIS RSRNTRTATV IWKRTTSASH LLNETQSSEA 360 TPTPSLKRCR LGEERISIVE RPEEECNSYG CTAKQNGNAY DSRLEERPNN LEEAENSSSD 420 SESTEVRDPA FRSMSSSRNP ISDLAIFKYC LGRLTDRSLL LKEIVTNASD TELFDFADQV 480 SLFSGCSHHS YQIHMAKRLI AEGEKAWNSI SENNHQVHWE NVVFEIEEQF MKISCCNTRS 540 LTQQDLELLR RIAGCHDYVV QENFERMWCW LYPVAYTLSR DWINAMWNSA SPKWIEGFVT 600 KEEAENSLQG PRGLQEPGTF ILRFPTSRSW PHPDAGSLVV TYVGRDFALH HRLLSLDCLF 660 R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_77.65 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021895061.1 | 0.0 | uncharacterized protein LOC110812561 isoform X1 | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | A0A061F892 | 0.0 | A0A061F892_THECC; SH2 domain protein A, putative isoform 2 | ||||
STRING | evm.model.supercontig_77.65 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5205 | 26 | 45 | Representative plant | OGRP5941 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_77.65 |
Publications ? help Back to Top | |||
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