PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_76.38
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 449aa    MW: 52614.9 Da    PI: 6.6264
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_76.38genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-18213259148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                  +g WT eEd llv++v+++G + W+ Ia++++ gR +kqc++rw+++l
  evm.model.supercontig_76.38 213 KGQWTIEEDRLLVQLVEKYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 259
                                  799*****************************.*************97 PP
2Myb_DNA-binding52.41.2e-16267307345
                                  SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
              Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   W++eEd+ l++a+ + G++ W+ Ia++++ gRt++ +k++w+
  evm.model.supercontig_76.38 267 IWSEEEDKVLIEAHMEIGNK-WAEIAKRLP-GRTENAIKNHWN 307
                                  6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129431.375208263IPR017930Myb domain
SuperFamilySSF466893.95E-32211306IPR009057Homeodomain-like
SMARTSM007175.9E-17212261IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-28214267IPR009057Homeodomain-like
CDDcd001678.28E-16216259No hitNo description
PfamPF139217.2E-18216273No hitNo description
PROSITE profilePS5129418.66264314IPR017930Myb domain
SMARTSM007171.7E-15264312IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-21268312IPR009057Homeodomain-like
CDDcd001672.92E-12268310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEFETKVGDE EDHHHHHLLP THQQPTFFSD HHSNYMKPYT KDEFLFEPPL SKGTFLQDFN  60
LLDDNHHFHG HHGPSSNLIF GVQTPCYDPF DAYTSYGCST NFDFYESKPL ISEINNGHGH  120
VMDNFQSGEY MNLHHHHHHH HHLQLGNVVD HMNQSSNVGF DYPLVKPMNF IVPDEVSCVS  180
AEDDYYKKAD MQKNRVFPWK KTWKTRKRNT IVKGQWTIEE DRLLVQLVEK YGVRKWSHIA  240
QMLPGRIGKQ CRERWHNHLR PDIKKDIWSE EEDKVLIEAH MEIGNKWAEI AKRLPGRTEN  300
AIKNHWNATK RRQFSKRKCR SKYPRGTLLQ DYIKTLNLGP PPTARSTTNS KPQTTSSHPP  360
LLQTPWTFCP DDHDEVQDHR LVQDYDFHDF GFDDKLLQDQ SCTIDSLLDD IPTCTADPDQ  420
KHESTQMDMA QFVDFKKELD LMEMIANV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-442113132104C-Myb DNA-Binding Domain
1msf_C2e-442113132104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_76.38
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895107.10.0transcription factor MYB98-like
SwissprotQ9S7L21e-108MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A2N9HX411e-154A0A2N9HX41_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_76.380.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-103myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]