PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_752.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 354aa    MW: 38619.8 Da    PI: 6.6124
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_752.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.92.2e-07139160223
                                  EETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                   C++Cgk F+r  nL+ H+r H
  evm.model.supercontig_752.2 139 FCEICGKGFKRDANLRMHMRAH 160
                                  6*******************99 PP
2zf-C2H211.70.00081226249123
                                  EEETTTT.EEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                                  y+C+ C  ksFs   +Lk+H++ +
  evm.model.supercontig_752.2 226 YSCNRCRkKSFSVAADLKSHLKHC 249
                                  99*******************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.76E-6135161No hitNo description
PROSITE profilePS5015712.133138165IPR007087Zinc finger, C2H2
SMARTSM003550.0015138160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.5E-6140163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035526188221IPR015880Zinc finger, C2H2-like
SMARTSM0035520226248IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSKHSVPAGF PPEYSVSGAV QNQLERGDLL VSLHNLSAIR ARMDSLQQFL SDSVNRDLLI  60
AKPQMDMVSS EIASAIHQTI VNGAALLCCA PPTAPDPNFP ATKPDIPLKP TAEKDELGVL  120
DFDIVELDAV ELLAEHLHFC EICGKGFKRD ANLRMHMRAH GDQYKTPEAL TKPGNSSVNQ  180
QSGCKTRFSC PFDGCNRNRK HNKFRSLKSV VCVRNHFKRS HCPKMYSCNR CRKKSFSVAA  240
DLKSHLKHCG EARWRCSCGT SFSRKDKLFG HVALFEGHMP AVMAAEEEKG DAIAMEEDDD  300
EGVGESGIGL TKGVELGANC SLEDGFEGLF DGFGSIESYC LQDVLESPNG SGI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_752.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901564.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ9C8N56e-74STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A2C9UW631e-144A0A2C9UW63_MANES; Uncharacterized protein
STRINGevm.model.supercontig_752.20.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69772644
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.39e-75C2H2 family protein
Publications ? help Back to Top
  1. Kobayashi Y, et al.
    Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
    Plant Physiol., 2013. 163(1): p. 180-92
    [PMID:23839867]
  2. Yokosho K,Yamaji N,Ma JF
    Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
    Plant Cell Physiol., 2014. 55(12): p. 2077-91
    [PMID:25273892]
  3. Geng X, et al.
    LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
    Plant J., 2017. 90(3): p. 491-504
    [PMID:28181322]
  4. Balzergue C, et al.
    Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
    Nat Commun, 2017. 8: p. 15300
    [PMID:28504266]
  5. Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
    Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
    Front Plant Sci, 2017. 8: p. 822
    [PMID:28567051]
  6. Jiang F, et al.
    Identification and characterization of suppressor mutants of stop1.
    BMC Plant Biol., 2017. 17(1): p. 128
    [PMID:28738784]
  7. Daspute AA, et al.
    Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
    Front Plant Sci, 2017. 8: p. 1358
    [PMID:28848571]
  8. Sharma A,Wai CM,Ming R,Yu Q
    Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
    Genome Biol Evol, 2017. 9(9): p. 2170-2190
    [PMID:28922793]
  9. Zhang Y, et al.
    The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 118
    [PMID:29491872]