PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_752.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 343aa    MW: 38200.9 Da    PI: 6.4429
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_752.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.2e-191562148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 +g+WT+eEd++l+++++ +G g+W++ ++  g++R++k+c++rw +yl
  evm.model.supercontig_752.1 15 KGPWTPEEDQKLIQYIQNHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                                 79********************************************97 PP
2Myb_DNA-binding569e-1868113148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                  rg++++eE++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
  evm.model.supercontig_752.1  68 RGKFSEEEEQTILNLHSILGNK-WSAIASHLP-GRTDNEIKNFWNTHL 113
                                  89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3021062IPR017930Myb domain
SuperFamilySSF466894.12E-3212109IPR009057Homeodomain-like
SMARTSM007171.9E-151464IPR001005SANT/Myb domain
PfamPF002495.0E-181562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-251669IPR009057Homeodomain-like
CDDcd001672.05E-121762No hitNo description
PROSITE profilePS5129426.51263117IPR017930Myb domain
SMARTSM007172.2E-1767115IPR001005SANT/Myb domain
PfamPF002491.1E-1668113IPR001005SANT/Myb domain
CDDcd001673.21E-1370113No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2770118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRSPPCDDQ GGLKKGPWTP EEDQKLIQYI QNHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEEEEQTIL NLHSILGNKW SAIASHLPGR TDNEIKNFWN THLKKRLIQM  120
GFDPMTHQPR TDIFTSLTHL LALANLKDLI MDHHYHQPVE EQALRLQAEA LQMANLQYLQ  180
YLLQPPAASS STPTTNMMNI NSEFTDIDYS VINLLNLLAS AQPKQTTSFD VETTACLQGM  240
LNNVVDDNSI PFAHLPALLQ VQASPSSDLF RALRNKDQTG SPSSPIWLVS SSSSPSPPST  300
AASDPPHHSL TETSNKNDME NNACFSSSYG GWPDLLLDET FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-31131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_752.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901596.10.0transcription factor MYB41-like
SwissprotQ9S9Z21e-102MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A498HXN21e-134A0A498HXN2_MALDO; Uncharacterized protein
STRINGevm.model.supercontig_752.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-94myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]