PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_74.86 | ||||||||
Common Name | ERF1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 23524.3 Da PI: 4.9241 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.5 | 2.1e-15 | 60 | 107 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +Wv+eIr+p++ ++r++lg++ ++e+Aa+a++ a+++l+g evm.model.supercontig_74.86 60 YRGIRRRS--DKWVSEIREPRK---TTRIWLGTYPSPEMAAAAYDVAALALKG 107 9***9765..7********843...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-25 | 59 | 116 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-26 | 59 | 121 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.297 | 59 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-18 | 59 | 116 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-9 | 60 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.42E-16 | 60 | 117 | No hit | No description |
PRINTS | PR00367 | 2.7E-6 | 60 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-6 | 97 | 117 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MADDHDPKIL PSNVSQLDQP DHHDPHSQTA LPNIPTCEIP DPSKFTNMAS SSSTRKHPMY 60 RGIRRRSDKW VSEIREPRKT TRIWLGTYPS PEMAAAAYDV AALALKGGDA VLNFPALVGT 120 YPVPKSTSPA DIRDAATAAA ALKKPPTAGD DPAPDHHQYK GEFIDEEELL NMPNLLVDMA 180 EGMMVSPPRI SFPPSDDSQE NFDHGESLWS YFY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_74.86 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX532988 | 0.0 | JX532988.1 Carica papaya ethylene-responsive transcription factor 1 (ERF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021895320.1 | 1e-157 | ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9FJ90 | 4e-51 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | T1QCH2 | 1e-154 | T1QCH2_CARPA; Ethylene-responsive transcription factor 1 | ||||
STRING | evm.model.supercontig_74.86 | 1e-156 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1957 | 27 | 77 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 1e-46 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_74.86 |
Publications ? help Back to Top | |||
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