PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_74.80
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 667aa    MW: 74266.9 Da    PI: 6.466
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_74.80genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS415.35.3e-1272766453373
                         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                   lL+ c+ea+ s++  ++++++a+l +lasp++ +p+ Rl+ay+teALa r++r ++++++  +p+e ++ + +   +al+l
  evm.model.supercontig_74.80 276 ALLTGCVEAIGSKNIPAINHFIAKLGDLASPRAgNPVSRLTAYYTEALALRVTRLWPQIFHVTTPREFDRVDDDLGGTALRL 357
                                  789*************************999877***********************************999999999**** PP

                         GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerL 165
                                  +++vsPi+kf h+taN+++l+a+eg++rvHiiDfdi+qGlQWp+++q+La+R+++p ++RiTg+g+    sk+el+etg+rL
  evm.model.supercontig_74.80 358 LNQVSPIPKFIHFTANEMLLRAFEGKDRVHIIDFDIKQGLQWPSFFQSLACRRNPPTHVRITGIGE----SKQELNETGDRL 435
                                  ******************************************************************....************ PP

                         GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                  a fAe+l++pfef++ v++rled++l++L+vk++E++ Vn+++qlh++l +    +   +++L l++s++P+ +v++eqea+
  evm.model.supercontig_74.80 436 AVFAESLNLPFEFHP-VVDRLEDVRLWMLHVKEKENVGVNCIFQLHKILYDGNRAAF--RDFLGLIRSTNPTAIVMAEQEAE 514
                                  ***************.7********************************76666655..99********************* PP

                         GRAS 248 hnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                                  hn+ s+  r++++l+yy+a+fds+  ++lp +s  r+k+E++ +grei+++vaceg+er+erhe++ekW+ ++e+ GF+ + 
  evm.model.supercontig_74.80 515 HNTLSLESRVCNSLKYYAAIFDSInCTNLPVDSPVRMKIEEM-FGREIRSIVACEGSERVERHERFEKWKTMMEQGGFRCMG 595
                                  ************************99****************.*************************************** PP

                         GRAS 329 lsekaakqaklllrkvksdgyrve....eesgslv.lgWkdrpLvsvSaW 373
                                  +se++  q ++ll++++ d ++v     e++g+++ l+W+d+pL++vS+W
  evm.model.supercontig_74.80 596 VSEREKVQSQMLLKMYSCDNFHVRqqgeENDGAALtLTWEDQPLYTVSSW 645
                                  *****************999***9666534555445************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.127248621IPR005202Transcription factor GRAS
PfamPF035141.8E-124276645IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRNE ASAQYQACHF QLPSMSTQRL DLPCTFPRKE TSRSQPIRPV  60
GLSVEKPIES KITSSRSLKH NLRLPPLSTT ATTAFGEGRR EIKDEFWEGK GKNLKRFAEQ  120
GLVDDVCLSR AKRKKGGSDG LGLGQLGGNF WFQPNSQVLP FSLTYSGDEE RACFVPGEVI  180
SPPLPLSNNP WLESVITEIT DLGEKDNTSR CPVKEASGSS ASSDSHSLGL KLNESNTEHE  240
EVGNGSGNPY PYEGASVEAG KELNNRGEHQ GFELLALLTG CVEAIGSKNI PAINHFIAKL  300
GDLASPRAGN PVSRLTAYYT EALALRVTRL WPQIFHVTTP REFDRVDDDL GGTALRLLNQ  360
VSPIPKFIHF TANEMLLRAF EGKDRVHIID FDIKQGLQWP SFFQSLACRR NPPTHVRITG  420
IGESKQELNE TGDRLAVFAE SLNLPFEFHP VVDRLEDVRL WMLHVKEKEN VGVNCIFQLH  480
KILYDGNRAA FRDFLGLIRS TNPTAIVMAE QEAEHNTLSL ESRVCNSLKY YAAIFDSINC  540
TNLPVDSPVR MKIEEMFGRE IRSIVACEGS ERVERHERFE KWKTMMEQGG FRCMGVSERE  600
KVQSQMLLKM YSCDNFHVRQ QGEENDGAAL TLTWEDQPLY TVSSWAAMDI GGSSSSFSQP  660
GGSCFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6228164526378Protein SCARECROW
5b3h_A3e-6228164525377Protein SCARECROW
5b3h_D3e-6228164525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_74.80
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895334.10.0scarecrow-like protein 28
RefseqXP_021895335.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A061G6280.0A0A061G628_THECC; GRAS family transcription factor
STRINGevm.model.supercontig_74.800.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Representative plantOGRP55071521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein