PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_73.4
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 300aa    MW: 32926.6 Da    PI: 8.2372
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_73.4genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-175095147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  evm.model.supercontig_73.4 50 RGHWRPAEDSKLKELVAQYGPQNWNLIAEHLE-GRSGKSCRLRWFNQ 95
                                899*****************************.***********996 PP
2Myb_DNA-binding54.82.2e-17102145146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 r +++++E+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  evm.model.supercontig_73.4 102 RRAFSEDEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 145
                                 678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.884596IPR017930Myb domain
SMARTSM007174.7E-154998IPR001005SANT/Myb domain
PfamPF002498.2E-175095IPR001005SANT/Myb domain
SuperFamilySSF466894.4E-2850143IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-2651103IPR009057Homeodomain-like
CDDcd001673.85E-145394No hitNo description
PROSITE profilePS5129426.63897151IPR017930Myb domain
SMARTSM007171.8E-14101149IPR001005SANT/Myb domain
PfamPF002495.7E-14102144IPR001005SANT/Myb domain
CDDcd001671.19E-11104144No hitNo description
Gene3DG3DSA:1.10.10.606.3E-20104150IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGAKRINDEK DGFLGSENKG KLSLNLGHDQ EEEGKSSGGS KNGHTKLCAR GHWRPAEDSK  60
LKELVAQYGP QNWNLIAEHL EGRSGKSCRL RWFNQLDPRI NRRAFSEDEE ERLLAAHRLY  120
GNKWAMIARL FPGRTDNAVK NHWHVIMARK HREQASIYRR RKPTSSSSSS CHPYHLTVQN  180
NNNACSESTI SSTIDESAST CTDLSLTPSA KVSPPFLNTL GPVKLMGESG EKVIAMGNGD  240
FDRFIYGNGV VGVDQSGHSD SNSEVSGAES VGTNRINLSS SGDNEKINLP YIDFLGVGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-34481505107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_73.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895363.10.0transcription factor MYB56
SwissprotQ5NBM82e-76CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A2N9IJN51e-138A0A2N9IJN5_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_73.40.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.15e-73myb domain protein 105
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]