PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_71.68
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family LSD
Protein Properties Length: 147aa    MW: 15270.8 Da    PI: 7.9155
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_71.68genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.69.6e-142953125
                      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                 C+gCr+lL+YP GA+sV+Ca+C +V
  evm.model.supercontig_71.68 29 CSGCRNLLMYPVGATSVCCAVCSAV 53
                                 **********************998 PP
2zf-LSD146.84.9e-156892125
                      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                 CggC+tlL+Y rGA+sV+C++C+tV
  evm.model.supercontig_71.68 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
                                 ************************9 PP
3zf-LSD141.81.7e-13106130125
                      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                  Cg+Cr lL+Y +GA+sV+Ca+C++V
  evm.model.supercontig_71.68 106 CGNCRMLLMYQYGARSVKCAVCNFV 130
                                  ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.109.2E-425127No hitNo description
TIGRFAMsTIGR010533.7E-132656IPR005735Zinc finger, LSD1-type
PfamPF069439.0E-112953IPR005735Zinc finger, LSD1-type
SuperFamilySSF486959.91E-529127IPR011031Multihaem cytochrome
TIGRFAMsTIGR010538.8E-156594IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126892IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.0E-12103131IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12106130IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPPYTPSA NGFQSQLVCS GCRNLLMYPV GATSVCCAVC SAVTAVPPPG  60
TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGNCR MLLMYQYGAR  120
SVKCAVCNFV TPVGASTSTT EQKYNA*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_71.68
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895584.11e-101protein LOL1
RefseqXP_021895585.11e-101protein LOL1
SwissprotQ93ZB12e-80LOL1_ARATH; Protein LOL1
TrEMBLA0A067KEI22e-90A0A067KEI2_JATCU; Uncharacterized protein
STRINGevm.model.supercontig_71.681e-100(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-65lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]