PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_71.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 25265 Da PI: 10.5406 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48 | 3e-15 | 114 | 164 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GV++++ +g+Wv+eIr p + r+ +g+++tae Aa a+++a+ kl+ e evm.model.supercontig_71.10 114 LYRGVTQRH-WGKWVVEIRLpP-----NkMRVLVGTYDTAEVAAYAYERAAYKLRRE 164 59******9.**********88.....44*************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.78E-15 | 113 | 173 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-22 | 114 | 172 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-22 | 114 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-17 | 114 | 171 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.833 | 114 | 171 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-9 | 115 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-7 | 115 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-7 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MEVGFADRFH QLEDTLRWLI DVLMLNKEGS SSNAPSQTGQ TLPNCNAEKN DWPRLPFYSK 60 PKTFAFAGEM CRSIAAQTSQ ESRANTFFAR NPLINPPQSS VSASSYLCPM KKKLYRGVTQ 120 RHWGKWVVEI RLPPNKMRVL VGTYDTAEVA AYAYERAAYK LRRECTRLNF TNLKDPRKLG 180 FIDSTRLTAL KNSVDMKIQA ICQRVGRERR KLRERTEKH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 206 | 212 | RERRKLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_71.10 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021894819.1 | 2e-65 | ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 3e-32 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A4D9AEW6 | 2e-45 | A0A4D9AEW6_SALSN; EREBP-like factor | ||||
STRING | evm.model.supercontig_71.10 | 1e-165 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4174 | 25 | 51 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 1e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_71.10 |
Publications ? help Back to Top | |||
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