PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_70.118 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 340aa MW: 35603.3 Da PI: 9.5498 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.3 | 1.6e-39 | 64 | 149 | 2 | 87 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssa 82 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a+s s+s+ evm.model.supercontig_70.118 64 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAASGSVSQ 144 789******************************************************************999666666666 PP TCP 83 snsss 87 + s evm.model.supercontig_70.118 145 QGASL 149 63333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.5E-32 | 69 | 154 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 70 | 124 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MDPKASSKHS QDQVPSFLSL PQQQQQQQQQ QQQQSQTMAD NKPAEVKDFQ IVIADKEEGK 60 KQLAPKRSSN KDRHTKVEGR GRRIRMPALC AARIFQLTRE LGHKSDGETI QWLLQQAEPS 120 IIAATGTGTI PASALAAASG SVSQQGASLS AGLHAQKIDE LGGLGGSSLG SGTSRTSWAM 180 VGGVGAGSVG GANLGRPHHV TTGLWPPVTG FGFQSSSTGP STTGLGSEGG GGGGSNYLQK 240 IGFPGFDLPA AAATNMGPLS FTSILGATNQ QLPGLELGLS QDGHIGVLNP QALSQIYQQM 300 GQARVHQQHH HQQQQHQQHQ HHHQQQQASG KDDSQGSGQ* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_70.118 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021895732.1 | 0.0 | transcription factor TCP20 | ||||
Refseq | XP_021895734.1 | 0.0 | transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 2e-87 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A1Q3B8Z5 | 1e-149 | A0A1Q3B8Z5_CEPFO; TCP domain-containing protein | ||||
STRING | evm.model.supercontig_70.118 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4050 | 27 | 59 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27010.1 | 4e-50 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_70.118 |