PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_70.116 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GRAS | ||||||||
Protein Properties | Length: 698aa MW: 76111.9 Da PI: 5.7804 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 421.8 | 5.9e-129 | 316 | 696 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn...... 73 lv+lLl cAeav+++d a+++L +l+ +sp gd+mqR+a++fteAL+arla +++ ++++ + + ++++ evm.model.supercontig_70.116 316 LVHLLLYCAEAVAKEDYMSARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAAtlTTKPTAATTTIATHTSSSsssstp 396 68****************************************************943222233222222222222334545 PP GRAS 74 ..........sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRi 144 s+e l+++++ ++++P++kf+h+t NqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+ lRi evm.model.supercontig_70.116 397 kslssyfppnSVEILKIYQIVYQACPYIKFAHFTSNQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGALFLRI 477 55555555555555555599************************************************************* PP GRAS 145 TgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225 Tgvg e+++etg+ La++A++l++pfef++ + + le++++++++ + gEalaVn v +lhr++ +l evm.model.supercontig_70.116 478 TGVGY----PIESVRETGRCLAELAQSLHIPFEFHP-IGEPLEEIKPHMFNRRVGEALAVNAVNRLHRVP--GNCLG---- 547 *****....99*************************.7*******************************9..44444.... PP GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306 ++L ++++ P++v+vve+ea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++ei+n+vacegaer+ evm.model.supercontig_70.116 548 NLLAMIRDQAPNIVTVVEKEANHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGAERI 628 5******************************************************************************** PP GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 rhe+lekWr+ +e GFk vpls +a++q k ll ++ dgyr+ e++g+l+lgW+dr+++++SaWr evm.model.supercontig_70.116 629 DRHERLEKWRKIMEGKGFKGVPLSANAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAILAASAWR 696 *******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.734 | 290 | 676 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-126 | 316 | 696 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MINSLCGSLG SIKSEGSCIK LQNPSSPNDD VLSDQSTTNK KPAALSSDHL DHQQTSSLTP 60 PCLNFPSLKF DLDGDVEPEN SFWETFLSEH LDSDFMILSP VRNLPPPASP QASTYNFNYV 120 HAMQGQSLSG CSPPRFSSQV GALTSQRPSG KAAGMSSPLQ KVFNSPNNQF MQIESLSLPA 180 IGEFLDDYNH YSTTGMATTS DKLYEMPDME AAGAVDGING TGDMGSSRFC GLVGTKTTEQ 240 GGLCSSSSMA GAQEGEIYQA GPSSNGPPFM TQQQQQVGQQ IRPPPPPAEQ HQSLNHSSVM 300 PLPIGSDQEQ DSGLQLVHLL LYCAEAVAKE DYMSARRYLH HLNRVVSPLG DSMQRVASCF 360 TEALSARLAA TLTTKPTAAT TTIATHTSSS SSSSTPKSLS SYFPPNSVEI LKIYQIVYQA 420 CPYIKFAHFT SNQAIFEAFE AEERVHVIDL DILQGYQWPA FMQALAARPG GALFLRITGV 480 GYPIESVRET GRCLAELAQS LHIPFEFHPI GEPLEEIKPH MFNRRVGEAL AVNAVNRLHR 540 VPGNCLGNLL AMIRDQAPNI VTVVEKEANH NGPYFLGRFL EALHYYSAIF DSLDATFPPD 600 SAQRAKVEQY IFAPEIRNIV ACEGAERIDR HERLEKWRKI MEGKGFKGVP LSANAVTQSK 660 ILLGLYSCDG YRLTEDKGCL LLGWQDRAIL AASAWRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 6e-92 | 323 | 695 | 25 | 377 | Protein SCARECROW |
5b3h_D | 6e-92 | 323 | 695 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_70.116 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021895683.1 | 0.0 | scarecrow-like protein 23 | ||||
Swissprot | G7L166 | 0.0 | RAM1_MEDTR; GRAS family protein RAM1 | ||||
TrEMBL | B9RH37 | 0.0 | B9RH37_RICCO; DELLA protein GAI1, putative | ||||
STRING | evm.model.supercontig_70.116 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16510 | 10 | 13 | Representative plant | OGRP5366 | 13 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 5e-91 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_70.116 |
Publications ? help Back to Top | |||
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