PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_7.78
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 371aa    MW: 43185.7 Da    PI: 9.9177
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_7.78genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.16.1e-3192145255
                     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                 prlrWtp+LH +Fv av++LGG+ekAtPk +lelm+vkgL+++hvkSHLQ+YR+
  evm.model.supercontig_7.78  92 PRLRWTPDLHLAFVYAVRRLGGQEKATPKLVLELMNVKGLSIAHVKSHLQMYRS 145
                                 8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.5988148IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2888146IPR009057Homeodomain-like
SuperFamilySSF466894.84E-1491146IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-2292147IPR006447Myb domain, plants
PfamPF002499.8E-893144IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MYDDIQEKSS TNQEVAENIH EVSSQKCSSF DLNEEASSEE DDFIALGHED DDADDDNEGI  60
RKKVMTCTKN RMEGDNSKRR SRVRQYVRSK LPRLRWTPDL HLAFVYAVRR LGGQEKATPK  120
LVLELMNVKG LSIAHVKSHL QMYRSKKLDE SGQVVISQRG RRVNGRERFQ SILQPVTSSS  180
LHHLRMENGG IVLSQHSPLK HNIFSCLSPR RFDYGASFSR YQEWKNVSEA NITTRHSLVN  240
KDHMKSFLRS QHNLIDTAMR TEAMRPTRFL EEKQWPLFES IDNYWKVNRS NIENINHNRH  300
FSTRPSSYKR HLATGIMATK RKWISEVQLN QETKTREKLP DLQLRLSRRA VVDEEISHKS  360
ELEINTQLSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-1693147458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-1693147458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-1693147357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1693147357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1693147357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1693147357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-1693147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-1693147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-1693147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-1693147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-1693147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-1693147458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_7.78
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907702.10.0uncharacterized protein LOC110822012 isoform X1
TrEMBLA0A061GEX78e-96A0A061GEX7_THECC; Myb-like HTH transcriptional regulator family protein, putative
STRINGevm.model.supercontig_7.780.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-37G2-like family protein