PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_7.239 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | HRT-like | ||||||||
Protein Properties | Length: 135aa MW: 14325.2 Da PI: 9.3528 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 31.2 | 3.8e-10 | 52 | 77 | 1 | 26 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeH 26 +CG++l++Gs+C+r+ kg RC++H evm.model.supercontig_7.239 52 VCGAALRNGSFCTRSLTKGHERCWQH 77 7************************* PP | |||||||
2 | HRT-like | 54.1 | 2.5e-17 | 100 | 129 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCGv+ GsvC+++P+ gRKRCe+HKGmR evm.model.supercontig_7.239 100 ICGVTSPGGSVCEKSPAGGRKRCEQHKGMR 129 8***************************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MKINALISKS AKNKSGVNLG GCASDNELHN DPASKSMLFS DRCSTDRDPK TVCGAALRNG 60 SFCTRSLTKG HERCWQHRVN GCDSSFSCSL KSDSQSRSVI CGVTSPGGSV CEKSPAGGRK 120 RCEQHKGMRL IVSQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in the regulation of cell differentiation in meristems (By similarity). Binds DNA without sequence preference (PubMed:22226340). {ECO:0000250|UniProtKB:F4K933, ECO:0000269|PubMed:22226340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_7.239 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021907781.1 | 3e-90 | LOW QUALITY PROTEIN: protein EFFECTOR OF TRANSCRIPTION 2-like | ||||
Swissprot | F4JU69 | 1e-16 | ET1_ARATH; Protein EFFECTOR OF TRANSCRIPTION 1 | ||||
TrEMBL | A0A2P2PIH4 | 8e-19 | A0A2P2PIH4_RHIMU; Uncharacterized protein LOC103453197 | ||||
STRING | evm.model.supercontig_7.239 | 2e-93 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2954 | 27 | 63 | Representative plant | OGRP5248 | 14 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26170.1 | 2e-17 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_7.239 |