PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_7.129
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family AP2
Protein Properties Length: 541aa    MW: 61076.2 Da    PI: 7.0384
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_7.129genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.53.2e-0890142155
                          AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  s y+GV+++k +gr++  ++d s+ n+  k    g f  +  Aa+a++ a++kl++
  evm.model.supercontig_7.129  90 SIYRGVTRNKVTGRFETFLWDNSNtNN--KGKT-GGFTDEIAAARAYDLAALKLWK 142
                                  57*******************777565..6655.4466669************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-590142IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-1090151IPR016177DNA-binding domain
PROSITE profilePS5103214.05291150IPR001471AP2/ERF domain
SMARTSM003806.5E-991156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-1091151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-5164189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MDDDNQNVHI VDSESPNNII EQQKEEIRIM DDDNQTVHAV DNESSKNIII EQKEEIRQND  60
VGNQSRDEDP NGSSKKRAIR SERISGTKSS IYRGVTRNKV TGRFETFLWD NSNTNNKGKT  120
GGFTDEIAAA RAYDLAALKL WKKEESLNFP SSDYKEDMEE MKDSQEEAAR AYDIASIRLR  180
GHKAMTNYDL NRYDIQGILQ CPMLPISKGA SKLLINSTVE EILCKKRNSK KLEVKNLEDK  240
IPEDGDQSSN GRPFNGDPNL RLFGCGNSFP GECSTMPVNN QINRHYPDSS LSQNHGFSSS  300
QAHQKRPSYD GRDPDRHFFT HGFSLKPGFL HKLSGTERNA YQENAKSSHQ NPFPSSPTSN  360
NGLHSSTARF DGNAIFGNPI KNFDLQNPTS FPGSSSSRVD GTEFSRNSNN NLDFQKQILF  420
HDFSIPKVIK NEFSENPNKY SGFQENLYLL NNFSSHKVNR NRFFKNPNST YHEDSSTKAE  480
MNFQQMCNGN LTEKGKSIVR NFPFKKLKVE VSTDLDDEMK LLQGGLDPNS KQPNSSSSNK  540
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_7.129
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907742.11e-102AP2-like ethylene-responsive transcription factor PLT1
STRINGevm.model.supercontig_7.1290.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17569610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.13e-19AP2 family protein