PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_695.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 171aa MW: 19719.1 Da PI: 8.2179 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.2 | 1.4e-15 | 17 | 63 | 4 | 50 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +n+++ q f+kRr+g+ KKA+E S+LC++++a+iifs++ k + ++ evm.model.supercontig_695.2 17 SNEIKLQEIFTKRRAGLSKKASEWSTLCGVDIAIIIFSPSKKAFSFA 63 688888888*******************************9988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-22 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.68 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-20 | 7 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-14 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-17 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-14 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-14 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MDKKSKGRQK IEMIKMSNEI KLQEIFTKRR AGLSKKASEW STLCGVDIAI IIFSPSKKAF 60 SFAHPCVEKV IEDFIYGNPP RDTSGAMTLI EVHCNSRIHE LNMILTQVMN QLEIEKNRNA 120 ELKEIQKICE SKCWWMGQKQ EMLFSELEHL KTSLEELEKK VTKEAEMIII * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_695.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238590 | 1e-162 | AC238590.1 Carica papaya BAC clone 12I03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021912031.1 | 1e-104 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 1e-47 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A067EEZ4 | 4e-63 | A0A067EEZ4_CITSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_695.2 | 1e-121 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-50 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_695.2 |
Publications ? help Back to Top | |||
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