PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_69.81
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TALE
Protein Properties Length: 143aa    MW: 16442.4 Da    PI: 7.7756
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_69.81genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.85e-10851192155
                                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                  k +yp+++++  LA+++gL+++q+ +WF N+R ++
  evm.model.supercontig_69.81  85 KWPYPTEADKNALADSTGLDQKQINNWFINQRKRH 119
                                  569*****************************985 PP
2ELK26.81.2e-093960122
                          ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                                 ++K+ Llr ++++++sLk EFs
  evm.model.supercontig_69.81 39 DIKDKLLRRFGSHISSLKLEFS 60
                                 58*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011881.8E-43960IPR005539ELK domain
PROSITE profilePS512139.2023959IPR005539ELK domain
PfamPF037891.3E-73960IPR005539ELK domain
PROSITE profilePS5007112.63359122IPR001356Homeobox domain
SuperFamilySSF466895.13E-2060133IPR009057Homeodomain-like
SMARTSM003896.2E-1361126IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-2864123IPR009057Homeodomain-like
CDDcd000861.98E-1268123No hitNo description
PfamPF059206.0E-1879118IPR008422Homeobox KN domain
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MKIENDKVVS EDGAASSEDE FSGGEIEVQE GQPRSDDQDI KDKLLRRFGS HISSLKLEFS  60
KKKKKGKLPR EARQILLSWW NVHYKWPYPT EADKNALADS TGLDQKQINN WFINQRKRHW  120
KPSENMPFGL MDNISGQFFT GD*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_69.81
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895815.14e-95homeobox protein knotted-1-like 6
SwissprotQ84JS62e-67KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A061EE175e-70A0A061EE17_THECC; KNOTTED1-like homeobox gene 6
STRINGevm.model.supercontig_69.811e-101(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.17e-62KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]