PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_684.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 535aa    MW: 58113.7 Da    PI: 6.763
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_684.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30288346259
                                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                  +Dg++WrKYGqK+ kg+++pr+YYrCt+a +Cpv+k+v+r+aed++++++tYeg+Hnh+
  evm.model.supercontig_684.1 288 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtSCPVRKQVQRCAEDKTILVTTYEGNHNHP 346
                                  7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-33272348IPR003657WRKY domain
SuperFamilySSF1182901.7E-27280348IPR003657WRKY domain
PROSITE profilePS5081129.103282348IPR003657WRKY domain
SMARTSM007746.6E-36287347IPR003657WRKY domain
PfamPF031064.6E-26289346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MDLSATTDHN HGLMITLQRD DRDCDPEDDL VLGQPTMTSD DKRRRSMISE MDFFANERSS  60
LLKFGVKKET SAIELDHQHD EHINTGLNLL TTTSGSEKSA ADDGVTLQKT EDKQKLMVLR  120
AELNRMKAEN QRLTGMLDEA NHNYNALQAH FASLMQRRQS QNPNTDLHEQ RRHGARQFLD  180
LGQAAMADER ENEQLQSCSH GRLQAAMAVS SPPRSTIVES MAAVQDQSNG RGDHSAERSD  240
NSKESEERGS KIPKLNSSRD VEEAQETVSI IRKARVSVRA RSEASMISDG CQWRKYGQKM  300
AKGNPCPRAY YRCTMATSCP VRKQVQRCAE DKTILVTTYE GNHNHPLPPA AMAMASTTSA  360
AASMLLSGSM TSLDGPGLIN SNFLAKTILP AACPPSLATL SASAPFPTVT LDLTSTTSDP  420
YSFSQKKPIL NNNNNSNNNL SYMLGHALQN LSKFSGLFGM DPLHHHHMGN GLMMQTPSVS  480
SSAVHDSTVG STTVEPSFTA ALMAAITAVM GANNVHQNNN GSSSTTTGNN SGDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22274350176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_684.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902726.10.0WRKY transcription factor 42-like
TrEMBLA0A1R3ILQ41e-133A0A1R3ILQ4_COCAP; DNA-binding WRKY
STRINGevm.model.supercontig_684.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1924667
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.13e-74WRKY family protein