PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_67.60
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 297aa    MW: 34170.2 Da    PI: 8.0544
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_67.60genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.51.5e-37181273128
                          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                  pGfrFhPtd+elv +yL++kv++k++++ e ik++diyk++PwdLpk  + +++e yfF+kr +ky+++ r+nr+t sg+Wk
  evm.model.supercontig_67.60  18 PGFRFHPTDDELVGFYLRRKVDKKPIRI-ELIKQIDIYKYDPWDLPKGSSVGDNESYFFCKRGRKYRNSIRPNRVTGSGFWK 98 
                                  9***************************.89***************8888899***************************** PP

                          NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  atg dk+v+s               +g + kg+ktdW+mhe+rl
  evm.model.supercontig_67.60  99 ATGIDKPVYS---------------NGGEGKGTKTDWMMHEFRL 127
                                  *********9...............456788999********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-4614157IPR003441NAC domain
PROSITE profilePS5100537.24116157IPR003441NAC domain
PfamPF023656.3E-1918127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMNSKDNSSK EEEEGPLPGF RFHPTDDELV GFYLRRKVDK KPIRIELIKQ IDIYKYDPWD  60
LPKGSSVGDN ESYFFCKRGR KYRNSIRPNR VTGSGFWKAT GIDKPVYSNG GEGKGTKTDW  120
MMHEFRLPTN VDASASSSTR TSLQEAEVWT LCRIFKRNVA NRKYTPDWRE LATKRTHHPV  180
DTNHVSIKPY TSQCNNNREA FINFSAPITH HQYHHYFIND DQKPIINHMM ITHANPLHAH  240
QIITPLPQQS PSVIPSCSNT SNQDDSSNDD QLLSYGNWDE LRPVVEFALD HHPSLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-381816319171NO APICAL MERISTEM PROTEIN
1ut4_B2e-381816319171NO APICAL MERISTEM PROTEIN
1ut7_A2e-381816319171NO APICAL MERISTEM PROTEIN
1ut7_B2e-381816319171NO APICAL MERISTEM PROTEIN
3swm_A3e-381816322174NAC domain-containing protein 19
3swm_B3e-381816322174NAC domain-containing protein 19
3swm_C3e-381816322174NAC domain-containing protein 19
3swm_D3e-381816322174NAC domain-containing protein 19
3swp_A3e-381816322174NAC domain-containing protein 19
3swp_B3e-381816322174NAC domain-containing protein 19
3swp_C3e-381816322174NAC domain-containing protein 19
3swp_D3e-381816322174NAC domain-containing protein 19
3ulx_A2e-3821581169Stress-induced transcription factor NAC1
4dul_A2e-381816319171NAC domain-containing protein 19
4dul_B2e-381816319171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_67.60
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895956.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK552e-76NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0M3R8671e-107A0A0M3R867_MANES; NAC transcription factors 93
STRINGevm.model.supercontig_67.600.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.12e-78NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]