PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 28103.1 Da PI: 8.4419 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.6 | 5.3e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a+iifs +gklye++s evm.model.supercontig_660.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALIIFSARGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 93.6 | 3.4e-31 | 82 | 172 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 +++++ ++ +q++ kLk+++e Lq++qRhllGe+L++L keL+qLe+qL+ sl+++Rs+K++++++q++el+kke++l ++ evm.model.supercontig_660.1 82 QTARDKQNNYQDYLKLKSKVEILQHSQRHLLGEELGDLGTKELEQLEHQLDMSLRQVRSTKTQFMIDQLSELRKKEEMLMDT 163 5677889*************************************************************************** PP K-box 91 nkaLrkkle 99 n+ Lr+kle evm.model.supercontig_660.1 164 NRVLRRKLE 172 *******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.403 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.4E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.05E-44 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 7.33E-34 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.3E-27 | 82 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.367 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALIIFSA RGKLYEFCSS 60 SSMVKTLERY QRVSYEALEA TQTARDKQNN YQDYLKLKSK VEILQHSQRH LLGEELGDLG 120 TKELEQLEHQ LDMSLRQVRS TKTQFMIDQL SELRKKEEML MDTNRVLRRK LEASDAALQP 180 HSWETTDHNI PFSRELTNPD AFYQPLQCNN TLQIGYNPAV TADEMIIASS SQNINGFIPG 240 WML* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 4e-25 | 92 | 171 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 4e-25 | 92 | 171 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 4e-25 | 92 | 171 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 4e-25 | 92 | 171 | 22 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00030 | SELEX | Transfer from AT2G03710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP942778 | 4e-60 | KP942778.1 Hibiscus sabdariffa var. sabdariffa clone HsMADS13RF1 MADS-box 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021903284.1 | 0.0 | MADS-box protein CMB1 | ||||
Swissprot | Q8LLR2 | 1e-114 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | D7T9Z7 | 1e-124 | D7T9Z7_VITVI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_660.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7135 | 24 | 40 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.2 | 1e-106 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_660.1 |
Publications ? help Back to Top | |||
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