PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_66.26
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TCP
Protein Properties Length: 436aa    MW: 45871.3 Da    PI: 8.0875
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_66.26genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1311.1e-40862022121
                          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssa 82 
                                  +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+
  evm.model.supercontig_66.26  86 TAAKRPSKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSG 167
                                  6789*****************************************************************9997777777777 PP

                          TCP  83 snsssgkaaksaakskksqksaasalnlak..esrakarar 121
                                  +n s++     +++   s +sa+  l+l +   s+a+ +ar
  evm.model.supercontig_66.26 168 ANISAP----PSKSAPLSFHSAS--LSLYDgnGSSAENQAR 202
                                  733333....3333334444444..3333311333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.9E-3892198IPR005333Transcription factor, TCP
PROSITE profilePS5136928.46592146IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDNTQDHRRR HHHQGLIQSQ KQEGASSLQL VSLDTQPAAH GSSQAPAHVS FMGSISNQHL  60
SATTSSSSSS SSSTSATTLS TTTVKTAAKR PSKDRHTKVD GRGRRIRMPA ICAARVFQLT  120
RELGHKSDGE TIEWLLQQAE PAIIAATGTG TIPANFSTLN VSLRSSGANI SAPPSKSAPL  180
SFHSASLSLY DGNGSSAENQ ARKFLNSPAT MLGFHPHQLY PQILSSDAAS MRINNASDTT  240
SSSLTRPYRE DLFKEQSPQQ HGDPAAENSP GAAKSTGRTG SVQEREPGSV RASNILPTPA  300
MWAVAPATTN GGNAFWMLPV SGGGGSSTTV GEPGMWTFPG HYSGGGRMSP VQFGSMLVQQ  360
PMGGQQLGLG VTESNMGILG GGVGGYGGSR VGLAMNLEQH QQQQHHHHHH HQQQHENQTQ  420
ASDSGDDDEN PTGSQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_66.26
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896084.10.0transcription factor TCP22
SwissprotQ9C7G45e-90TCP22_ARATH; Transcription factor TCP22
TrEMBLA0A061FIV61e-142A0A061FIV6_THECC; TCP family transcription factor, putative
STRINGevm.model.supercontig_66.260.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Representative plantOGRP45911023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.13e-77TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]