PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_65.73

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

ARR-B

Protein Properties

Length: 895aa MW: 98576.2 Da PI: 10.0324

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_65.73	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	59.6	6.7e-19	269	322	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl+W+p+L ++F av+ L G++ A Pktil++m+v++Lt + +SHLQkY+ evm.model.supercontig_65.73 269 KQRLVWNPDLKSKFTAAVNAL-GKNDARPKTILNMMDVPDLTQRQDASHLQKYKA 322 79*****************.99***************************85 PP
2	Response_reg	42.5	3.5e-15	23	126	1	105
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEEST CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtah 80 vl+vd e r+ l ++le+ +y +v++++ g +a+ ++ ++ + +i++ +e+ +++ ++k+ ++ + +piiv++++ evm.model.supercontig_65.73 23 VLVVDQETRSRMHLSSLLEQYNY-SVTTTEFGVAAVSMILAQPnlFKIIMVSMELHDLNITVFMKTVERTG--IPIIVMSSE 101 89*******************.***********888888******************9987..***** PP TTHHHHHHHHHTTESEEEESS--HH CS Response_reg 81 geeedalealkaGakdflsKpfdpe 105 ++ + a++al+ Ga +l+Kp+ pe evm.model.supercontig_65.73 102 NNIKAAVKALQDGAYYYLEKPILPE 126 *******************9766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	2.8E-18	19	142	No hit	No description
SuperFamily	SSF52172	9.82E-19	19	146	IPR011006	CheY-like superfamily
SMART	SM00448	8.6E-8	21	132	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	23.901	22	136	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	7.4E-11	23	126	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	3.33E-14	24	126	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.4E-19	267	323	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-11	267	322	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-15	269	321	IPR006447	Myb domain, plants
Gene3D	G3DSA:3.40.50.2300	8.3E-7	706	766	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 895 aa Download sequence Send to blast
MEMEKTNYRS KSSIPTFAQG LSVLVVDQET RSRMHLSSLL EQYNYSVTTT EFGVAAVSMI 60 LAQPNLFKII MVSMELHDLN ITVFMKTVER TGIPIIVMSS ENNIKAAVKA LQDGAYYYLE 120 KPILPEYARQ VWQYAMSRRR PNETTPGARP ASYVRRENRE ESSRKVVLEV VKISEGTGVS 180 TARKEAVNVG PNAPKREKKA VDQGKIGNGV GKNQANMDPL GMSKSSQNTP VSKRKEPNAG 240 AENGKSKVRK TRFGEEDDED DKGENGAKKQ RLVWNPDLKS KFTAAVNALG KNDARPKTIL 300 NMMDVPDLTQ RQDASHLQKY KAQAQPLPES KFPLTSLLLG NQINDSGPAL PMRENSSLLQ 360 SRSLQNRAHN SSSFRQFRSS SQRLQINNAR VQAGSSRPWL QNSNSVLQPG SPALAMPGNN 420 SVLQPESPML AMQGNNPVRR PGSASSLNLQ NNISMLQSGS SGNMQHNISL LQPGFPFRWQ 480 QTDVPMLHPG ANENYLMHIN NSLLQIGSSF NNVQNNASRM QVGSSFGVQT HTSILQPGSS 540 LNWVQNNLPM FQRTPSFNFW GNNKLLQCES LLDEPDEDLL LYHGPLPQWL QETLLVLRQG 600 SSSSSHGFQN YISILQPGFS SHSMNWVPIQ LGGGNSGLPS GGIFPFGSQM PSIAEDEELM 660 LILASFSQDI PPAAETLEGI FNQGPHGSLV PPLFSDNTSS HVLRDVMSSE TKTKVALKAL 720 DNGACFYLEK PVSSEDARQV WQHAMRKRRS NETTPGARPT SRVHRENKEE ISGKGVLEVV 780 KINEGAGVST ARKEVVNVDP NDPNGKKKAE DQGENGNGVE ENQANMEPLG MSQGGQNTPV 840 SNRKEPNAGA ENENNGRLLP QRMLAVMRMK RVVRRTGART VLKSNVWFGS KTYI*

Sequence ? help Back to Top

Protein Sequence Length: 895 aa Download sequence Send to blast

MEMEKTNYRS KSSIPTFAQG LSVLVVDQET RSRMHLSSLL EQYNYSVTTT EFGVAAVSMI  60
LAQPNLFKII MVSMELHDLN ITVFMKTVER TGIPIIVMSS ENNIKAAVKA LQDGAYYYLE  120
KPILPEYARQ VWQYAMSRRR PNETTPGARP ASYVRRENRE ESSRKVVLEV VKISEGTGVS  180
TARKEAVNVG PNAPKREKKA VDQGKIGNGV GKNQANMDPL GMSKSSQNTP VSKRKEPNAG  240
AENGKSKVRK TRFGEEDDED DKGENGAKKQ RLVWNPDLKS KFTAAVNALG KNDARPKTIL  300
NMMDVPDLTQ RQDASHLQKY KAQAQPLPES KFPLTSLLLG NQINDSGPAL PMRENSSLLQ  360
SRSLQNRAHN SSSFRQFRSS SQRLQINNAR VQAGSSRPWL QNSNSVLQPG SPALAMPGNN  420
SVLQPESPML AMQGNNPVRR PGSASSLNLQ NNISMLQSGS SGNMQHNISL LQPGFPFRWQ  480
QTDVPMLHPG ANENYLMHIN NSLLQIGSSF NNVQNNASRM QVGSSFGVQT HTSILQPGSS  540
LNWVQNNLPM FQRTPSFNFW GNNKLLQCES LLDEPDEDLL LYHGPLPQWL QETLLVLRQG  600
SSSSSHGFQN YISILQPGFS SHSMNWVPIQ LGGGNSGLPS GGIFPFGSQM PSIAEDEELM  660
LILASFSQDI PPAAETLEGI FNQGPHGSLV PPLFSDNTSS HVLRDVMSSE TKTKVALKAL  720
DNGACFYLEK PVSSEDARQV WQHAMRKRRS NETTPGARPT SRVHRENKEE ISGKGVLEVV  780
KINEGAGVST ARKEVVNVDP NDPNGKKKAE DQGENGNGVE ENQANMEPLG MSQGGQNTPV  840
SNRKEPNAGA ENENNGRLLP QRMLAVMRMK RVVRRTGART VLKSNVWFGS KTYI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	744	749	MRKRRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_65.73

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021896130.1	0.0	uncharacterized protein LOC110813352
STRING	evm.model.supercontig_65.73	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8222	3	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.1	3e-23	response regulator 1

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_65.73