PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_65.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GATA | ||||||||
Protein Properties | Length: 439aa MW: 48692.7 Da PI: 9.6259 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.6 | 1.8e-18 | 231 | 265 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +l evm.model.supercontig_65.5 231 CMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRL 265 99*****************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.701 | 225 | 261 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.3E-17 | 225 | 279 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.28E-14 | 228 | 288 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.3E-14 | 229 | 262 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.74E-13 | 230 | 277 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 231 | 256 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.3E-16 | 231 | 265 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MNSSWFFDEN FNGLSDDFFD DVVKCFDFPL EDVELNNGED WDAGFQNLEP PPANVLAGLS 60 SDLSDNTCKQ NVGVQQSRPM PFQYSGTSEV KQHPSTYGAP SSRSIFIHKS TNGKDSRLLQ 120 TSSPVSVLEN SSSSSAENPA SLNTKLSIPV KRTRSKRRRP SASYLQSTFR FISSVTASGE 180 SHATVESESE SCLAEKSSKK KQKKKRNLTL LSGSGETKKS LPDQSVPTRK CMHCEVTKTP 240 QWREGPMGPK TLCNACGVRY RSGRLLPEYR PAASPTFVPS LHSNSHKKVI EMRKKTEQLP 300 SKSVTYTVTP ENSHECLLLR RLCSRMKSNR LKCGKARGER GNVGEVPNGP RYEVFDSEIC 360 WNHEEGNVCF LRATRSSNLM DQQSGQLRGC YLSESGRRDG AALFRLSLNL SKLSWLPQDN 420 FLAASGRLAQ TAKIKNHS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 156 | RTRSKR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00130 | DAP | Transfer from AT1G08010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_65.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021896249.1 | 0.0 | GATA transcription factor 11-like | ||||
TrEMBL | A0A2P2LDR0 | 6e-98 | A0A2P2LDR0_RHIMU; Uncharacterized protein | ||||
STRING | evm.model.supercontig_65.5 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1681 | 25 | 89 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 2e-50 | GATA transcription factor 11 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_65.5 |