PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_65.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ARF | ||||||||
Protein Properties | Length: 649aa MW: 71538.7 Da PI: 7.2268 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.7 | 5.2e-24 | 109 | 210 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L + evm.model.supercontig_65.4 109 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVA 189 89****************************997556555..8***************************************** PP T-EEEEEE-SSSEE..EEEEE-S CS B3 77 gDfvvFkldgrsefelvvkvfrk 99 gD++vF + +++ l+v+++r+ evm.model.supercontig_65.4 190 GDSIVFL--RAENGDLCVGIRRA 210 *******..4488999****997 PP | |||||||
2 | Auxin_resp | 107 | 2.1e-35 | 275 | 358 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 a+ a+ +++FevvY+Prast+eF vk++ v++a++++++ GmRfkmafetedss++++ +Gtv+ v+ +dp+r+pnS+Wr+L evm.model.supercontig_65.4 275 AVALAAAGQPFEVVYYPRASTPEFFVKASAVKAAMRIHWCSGMRFKMAFETEDSSRISWfMGTVSFVQVADPIRFPNSPWRLL 357 5678999***************************************************************************9 PP Auxin_resp 83 k 83 + evm.model.supercontig_65.4 358 Q 358 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-37 | 102 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-29 | 106 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.51E-21 | 108 | 209 | No hit | No description |
SMART | SM01019 | 3.3E-22 | 109 | 211 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-22 | 109 | 210 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.211 | 109 | 211 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.5E-30 | 275 | 358 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.07 | 551 | 629 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MKEQEKSLDP QLWHACAGSM VQIPAVNSIV FYFPQGHAEH AQATAVDFSS SPRIPSSVLC 60 RVAAVKFLAD TETDEVYAKI RLIPLPNSEV DFDDNVVFGS DNPEKPASFA KTLTQSDANN 120 GGGFSVPRYC AETIFPRLDY TADPPVQTVI AKDIHGETWK FRHIYRGTPR RHLLTTGWST 180 FVNQKKLVAG DSIVFLRAEN GDLCVGIRRA KRGVGSGPEM ISPSSSSSGW STGQGNCTPF 240 GGFSAFLRGN EESKMLRNGN GSFRGKLRPE SVVEAVALAA AGQPFEVVYY PRASTPEFFV 300 KASAVKAAMR IHWCSGMRFK MAFETEDSSR ISWFMGTVSF VQVADPIRFP NSPWRLLQVA 360 WDEPDLLQNV KRVSPWLVEL ATPLGPGSPL CYLSDNTPAG IQGARQAQFG ISLSDLHLNN 420 KLQSGLFLSS FQRLDQHSRT YDSVRTTGHT EGNNENLSCL LTIGNSSCNS EKSDKTKRHQ 480 FVLFGQPILT EQQVSIDTTV TSRSLLEESK EKIKELSLQS TSRDRVSPER FAPAGFSWHQ 540 SFQTTESGLD TGHCKVFMET EDVGRTLDLS VLNSYEELYG RLANMFGIER SEILTHVLYR 600 DATGALKQTG DEPFSDFMKT AKRLTIKMGS GSETMGHGSQ GFGMLKVH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 9e-82 | 1 | 379 | 40 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_65.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021896197.1 | 0.0 | LOW QUALITY PROTEIN: auxin response factor 10 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A1R3J9L5 | 0.0 | A0A1R3J9L5_9ROSI; Auxin response factor | ||||
STRING | evm.model.supercontig_65.4 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 | Representative plant | OGRP526 | 15 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_65.4 |
Publications ? help Back to Top | |||
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