PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_65.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ARF
Protein Properties Length: 649aa    MW: 71538.7 Da    PI: 7.2268
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_65.4genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.2e-24109210199
                                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                 f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +
  evm.model.supercontig_65.4 109 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVA 189
                                 89****************************997556555..8***************************************** PP

                                 T-EEEEEE-SSSEE..EEEEE-S CS
                          B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                                 gD++vF   + +++ l+v+++r+
  evm.model.supercontig_65.4 190 GDSIVFL--RAENGDLCVGIRRA 210
                                 *******..4488999****997 PP

2Auxin_resp1072.1e-35275358183
                  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                                 a+  a+ +++FevvY+Prast+eF vk++ v++a++++++ GmRfkmafetedss++++ +Gtv+ v+ +dp+r+pnS+Wr+L
  evm.model.supercontig_65.4 275 AVALAAAGQPFEVVYYPRASTPEFFVKASAVKAAMRIHWCSGMRFKMAFETEDSSRISWfMGTVSFVQVADPIRFPNSPWRLL 357
                                 5678999***************************************************************************9 PP

                  Auxin_resp  83 k 83 
                                 +
  evm.model.supercontig_65.4 358 Q 358
                                 7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-37102213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-29106215IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-21108209No hitNo description
SMARTSM010193.3E-22109211IPR003340B3 DNA binding domain
PfamPF023625.2E-22109210IPR003340B3 DNA binding domain
PROSITE profilePS5086313.211109211IPR003340B3 DNA binding domain
PfamPF065075.5E-30275358IPR010525Auxin response factor
PROSITE profilePS5174518.07551629IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MKEQEKSLDP QLWHACAGSM VQIPAVNSIV FYFPQGHAEH AQATAVDFSS SPRIPSSVLC  60
RVAAVKFLAD TETDEVYAKI RLIPLPNSEV DFDDNVVFGS DNPEKPASFA KTLTQSDANN  120
GGGFSVPRYC AETIFPRLDY TADPPVQTVI AKDIHGETWK FRHIYRGTPR RHLLTTGWST  180
FVNQKKLVAG DSIVFLRAEN GDLCVGIRRA KRGVGSGPEM ISPSSSSSGW STGQGNCTPF  240
GGFSAFLRGN EESKMLRNGN GSFRGKLRPE SVVEAVALAA AGQPFEVVYY PRASTPEFFV  300
KASAVKAAMR IHWCSGMRFK MAFETEDSSR ISWFMGTVSF VQVADPIRFP NSPWRLLQVA  360
WDEPDLLQNV KRVSPWLVEL ATPLGPGSPL CYLSDNTPAG IQGARQAQFG ISLSDLHLNN  420
KLQSGLFLSS FQRLDQHSRT YDSVRTTGHT EGNNENLSCL LTIGNSSCNS EKSDKTKRHQ  480
FVLFGQPILT EQQVSIDTTV TSRSLLEESK EKIKELSLQS TSRDRVSPER FAPAGFSWHQ  540
SFQTTESGLD TGHCKVFMET EDVGRTLDLS VLNSYEELYG RLANMFGIER SEILTHVLYR  600
DATGALKQTG DEPFSDFMKT AKRLTIKMGS GSETMGHGSQ GFGMLKVH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-82137940388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_65.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896197.10.0LOW QUALITY PROTEIN: auxin response factor 10
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1R3J9L50.0A0A1R3J9L5_9ROSI; Auxin response factor
STRINGevm.model.supercontig_65.40.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]