PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_65.37
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 377aa    MW: 42823.2 Da    PI: 6.6953
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_65.37genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.3e-171462148
                                 TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                 +g+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl
  evm.model.supercontig_65.37 14 KGPWSPEEDSKLKDYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                                 79*********************************************97 PP
2Myb_DNA-binding41.62.8e-1369111246
                                  SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
              Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                  g ++ eEd ++  +++  G++ W+ Ia++++ gRt++++k++w++
  evm.model.supercontig_65.37  69 GEFSDEEDRIICSLFATIGSR-WSIIAAHLP-GRTDNDIKNYWNT 111
                                  789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.442962IPR017930Myb domain
SuperFamilySSF466898.58E-2811109IPR009057Homeodomain-like
SMARTSM007178.2E-131364IPR001005SANT/Myb domain
PfamPF002491.4E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241569IPR009057Homeodomain-like
CDDcd001673.40E-91662No hitNo description
PROSITE profilePS5129422.60563117IPR017930Myb domain
SMARTSM007173.1E-1367115IPR001005SANT/Myb domain
PfamPF002494.6E-1269111IPR001005SANT/Myb domain
CDDcd001675.93E-970113No hitNo description
Gene3DG3DSA:1.10.10.606.5E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKDYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC SLFATIGSRW SIIAAHLPGR TDNDIKNYWN TKLKKKLMAM  120
AASPNSHRKP PLPSSLQAPP PPPPPSPPSS SSLYKDFYSS FYTNSTKSFS GTGLELPIIN  180
PNLMLSNSSS ANSLLQNQDQ SFLLSSMQQS YYPNVKDQSN FLVFGSDQTA SCSSSDGSCS  240
QNNISNGPRE IKQEDHHHRS FMSNGYHHHH HHQDQDHQKY SLLLKNMSLA NYNNNCQYWA  300
DQDKNQNFNG EESRLDYGDV DLDQDVKQLV NSSNTVYNDD NNSNNYFFFN IDENKTQQEA  360
GDDEEDQKVM MYFYNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_65.37
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527211e-114KM052721.1 Gossypium hirsutum RAX-like transcription factor RAX2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896280.10.0transcription factor RAX2-like
TrEMBLB9HQM81e-116B9HQM8_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_65.370.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-72myb domain protein 36