PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_65.17 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | TCP | ||||||||
Protein Properties | Length: 159aa MW: 17432.8 Da PI: 9.4376 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 92.3 | 9.9e-29 | 26 | 91 | 5 | 70 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 k +++++h+kv+gRdRRvR++a+caar+F+L++eL f++++ ti WLl q++ +i++ tg + s+a evm.model.supercontig_65.17 26 KPKTKDRHAKVEGRDRRVRIPADCAARVFQLTRELSFKTNGDTIRWLLYQSESSIIARTGYGVSPA 91 789*********************************************************977776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.2E-24 | 28 | 85 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 22.418 | 29 | 83 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MSSNMNATNL DGADQPISKK PTGLPKPKTK DRHAKVEGRD RRVRIPADCA ARVFQLTREL 60 SFKTNGDTIR WLLYQSESSI IARTGYGVSP APPPPPPPPS PVVELFPGGS SFNPPAFQVY 120 RPVPLLPSPE FNHFMASYDL PYHFTGTHGI DMFEAAEK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_65.17 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021896117.1 | 1e-111 | transcription factor TCP19-like | ||||
Swissprot | Q9LT89 | 1e-25 | TCP19_ARATH; Transcription factor TCP19 | ||||
STRING | evm.model.supercontig_65.17 | 1e-113 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15750 | 10 | 16 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-23 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_65.17 |