PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_640.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 397aa    MW: 45068.7 Da    PI: 6.0185
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_640.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-162471148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 +g W++eEde+lv++  + G g+W+ Ia+  g+ R++k+c++rw +yl
  evm.model.supercontig_640.1 24 KGLWSPEEDEKLVNYMLRNGQGCWSDIAKNAGLLRCGKSCRLRWINYL 71
                                 678*****************************99************97 PP
2Myb_DNA-binding48.32.4e-1577121147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                  rg+++ +E++l+++++ +lG++ W+ Ia++++ gRt++++k++w++ 
  evm.model.supercontig_640.1  77 RGAFSRQEEDLIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNST 121
                                  89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-221974IPR009057Homeodomain-like
PROSITE profilePS5129417.2121971IPR017930Myb domain
SuperFamilySSF466897.81E-2822118IPR009057Homeodomain-like
SMARTSM007171.2E-122373IPR001005SANT/Myb domain
PfamPF002498.7E-152471IPR001005SANT/Myb domain
CDDcd001673.63E-102771No hitNo description
PROSITE profilePS5129425.42672126IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2575127IPR009057Homeodomain-like
SMARTSM007171.4E-1576124IPR001005SANT/Myb domain
PfamPF002492.6E-1477121IPR001005SANT/Myb domain
CDDcd001671.77E-1079122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MMRKPEEKLG GGIYSNDKMN KLRKGLWSPE EDEKLVNYML RNGQGCWSDI AKNAGLLRCG  60
KSCRLRWINY LRPDLKRGAF SRQEEDLIIH LHSLLGNRWS QIAARLPGRT DNEIKNFWNS  120
TLKKRLKNNS NNSTTFSSSP NNSITTDHDN SSDHARDQHH HLLMGGSAES EMMSMHNTND  180
HHDMMMSMCM DSLSSSSSSS SACMQHHNMV NLAASSNQFD PFSVIENRYD HHMITGSSCY  240
FDVNACVEIG DGGHHDDHAM TYGDYYGIME SSKMMGSLEG ELSLPPLEVE SRSNIKDNNN  300
NNKNNNNNNE YIIINNAANN SIIDNLKSHN NSNLNLNNNS LCFNNTDHQY GDDHNNMFGI  360
IENHHFPAEN LRMGDWDFES LMENISSFPF LDFQVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27221265108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903740.10.0transcription factor MYB83
TrEMBLA0A061E3791e-113A0A061E379_THECC; Myb domain protein 83
STRINGevm.model.supercontig_640.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70772642
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-62myb domain protein 46