PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_64.16
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 374aa    MW: 42870.6 Da    PI: 7.0207
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_64.16genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.72.4e-1930113998
                                  HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                           B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                  +++ +++l +p kfa+++++k   +  +tl+ +sg +W+v l  + k+++ ++  GW++Fvk++ L+e+Df+vFk++g + f
  evm.model.supercontig_64.16  30 HAGFNHQLPMPEKFATNFKKK--LPEIVTLKGPSGDTWNVGL--TEKDDALFFDHGWENFVKDHFLEENDFLVFKYNGVTHF 107
                                  6778999********877654..7889***************..********************************997777 PP

                                  ..EEEEE- CS
                           B3  91 elvvkvfr 98 
                                     v +f+
  evm.model.supercontig_64.16 108 --DVLIFD 113
                                  ..888887 PP

2B338.22.6e-12263345186
                                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvv 81 
                                  ff v+ p  v k+  +++p + + ++ + ++  ++++l++ +g+ W  +++  + + ++ +l +GWk+Fv +n+L+e D++v
  evm.model.supercontig_64.16 263 FFVVMRPTCVYKKFFMSIPSSWVIRNLSLEN--QDVILRT-NGNMWYARFSCyKPRHSGGLL-AGWKKFVLDNHLDEFDVCV 340
                                  889999999**************99944433..4688776.9********663444444445.5****************** PP

                                  EEE-S CS
                           B3  82 Fkldg 86 
                                  F+ ++
  evm.model.supercontig_64.16 341 FEPVR 345
                                  **553 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.87E-2021113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.62122115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-2124113IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-1125115IPR003340B3 DNA binding domain
CDDcd100173.20E-1830113No hitNo description
PfamPF023622.5E-1630113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-16260359IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.673263361IPR003340B3 DNA binding domain
PfamPF023622.7E-11263345IPR003340B3 DNA binding domain
CDDcd100177.79E-18263359No hitNo description
SMARTSM010191.6E-8263361IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-17263350IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGDTCKNCRS WEEEIFWTHF QTVHFSQFLH AGFNHQLPMP EKFATNFKKK LPEIVTLKGP  60
SGDTWNVGLT EKDDALFFDH GWENFVKDHF LEENDFLVFK YNGVTHFDVL IFDGQSMCEK  120
ASSYFVRKCG HGEHESGYNI KTKMPLSSVD IIHTPSAVEG TPRKATNIQN DTPPREPIIL  180
GASNKRMRSG NNSVRDPYNR QRGRHESDDF LEDVEIKPDI ANLSLSRKLC DSPEFLSKRR  240
PVTEDEKRNA LHLAEAATTD EGFFVVMRPT CVYKKFFMSI PSSWVIRNLS LENQDVILRT  300
NGNMWYARFS CYKPRHSGGL LAGWKKFVLD NHLDEFDVCV FEPVRLGSNP IVLDVRIFRV  360
VQAAIPSSQV RPD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_64.16
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896518.10.0B3 domain-containing protein REM16-like isoform X1
TrEMBLA0A1Q3CHQ81e-147A0A1Q3CHQ8_CEPFO; B3 domain-containing protein
STRINGevm.model.supercontig_64.160.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Representative plantOGRP6299819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-89B3 family protein