PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_64.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | B3 | ||||||||
Protein Properties | Length: 374aa MW: 42870.6 Da PI: 7.0207 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.7 | 2.4e-19 | 30 | 113 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +++ +++l +p kfa+++++k + +tl+ +sg +W+v l + k+++ ++ GW++Fvk++ L+e+Df+vFk++g + f evm.model.supercontig_64.16 30 HAGFNHQLPMPEKFATNFKKK--LPEIVTLKGPSGDTWNVGL--TEKDDALFFDHGWENFVKDHFLEENDFLVFKYNGVTHF 107 6778999********877654..7889***************..********************************997777 PP ..EEEEE- CS B3 91 elvvkvfr 98 v +f+ evm.model.supercontig_64.16 108 --DVLIFD 113 ..888887 PP | |||||||
2 | B3 | 38.2 | 2.6e-12 | 263 | 345 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvv 81 ff v+ p v k+ +++p + + ++ + ++ ++++l++ +g+ W +++ + + ++ +l +GWk+Fv +n+L+e D++v evm.model.supercontig_64.16 263 FFVVMRPTCVYKKFFMSIPSSWVIRNLSLEN--QDVILRT-NGNMWYARFSCyKPRHSGGLL-AGWKKFVLDNHLDEFDVCV 340 889999999**************99944433..4688776.9********663444444445.5****************** PP EEE-S CS B3 82 Fkldg 86 F+ ++ evm.model.supercontig_64.16 341 FEPVR 345 **553 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.87E-20 | 21 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.621 | 22 | 115 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.6E-21 | 24 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.2E-11 | 25 | 115 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.20E-18 | 30 | 113 | No hit | No description |
Pfam | PF02362 | 2.5E-16 | 30 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-16 | 260 | 359 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.673 | 263 | 361 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-11 | 263 | 345 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.79E-18 | 263 | 359 | No hit | No description |
SMART | SM01019 | 1.6E-8 | 263 | 361 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-17 | 263 | 350 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MGDTCKNCRS WEEEIFWTHF QTVHFSQFLH AGFNHQLPMP EKFATNFKKK LPEIVTLKGP 60 SGDTWNVGLT EKDDALFFDH GWENFVKDHF LEENDFLVFK YNGVTHFDVL IFDGQSMCEK 120 ASSYFVRKCG HGEHESGYNI KTKMPLSSVD IIHTPSAVEG TPRKATNIQN DTPPREPIIL 180 GASNKRMRSG NNSVRDPYNR QRGRHESDDF LEDVEIKPDI ANLSLSRKLC DSPEFLSKRR 240 PVTEDEKRNA LHLAEAATTD EGFFVVMRPT CVYKKFFMSI PSSWVIRNLS LENQDVILRT 300 NGNMWYARFS CYKPRHSGGL LAGWKKFVLD NHLDEFDVCV FEPVRLGSNP IVLDVRIFRV 360 VQAAIPSSQV RPD* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_64.16 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021896518.1 | 0.0 | B3 domain-containing protein REM16-like isoform X1 | ||||
TrEMBL | A0A1Q3CHQ8 | 1e-147 | A0A1Q3CHQ8_CEPFO; B3 domain-containing protein | ||||
STRING | evm.model.supercontig_64.16 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10428 | 23 | 35 | Representative plant | OGRP6299 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-89 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_64.16 |