PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_64.15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | B3 | ||||||||
Protein Properties | Length: 223aa MW: 26119.3 Da PI: 5.8734 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63 | 4.8e-20 | 33 | 107 | 13 | 93 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +++l +pk+f ++++ ++ + ++l+ +sg +W+v+l + k+++ ++++GW+eFvk++ Lke+D+++F++++rs f evm.model.supercontig_64.15 33 RQQLEIPKRFS-QYMK-EKLPESIVLRGPSGITWNVEL--TSKDDALFFQDGWQEFVKDHSLKENDVLIFRYHERSHF--D 107 56799*****8.7753.347889***************..********************************988887..3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.83E-23 | 20 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.03 | 21 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-23 | 23 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-12 | 24 | 114 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.03E-20 | 32 | 112 | No hit | No description |
Pfam | PF02362 | 4.8E-17 | 34 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MGETSEQCRQ WENIYWSHFQ CKQFAQFLLG DFRQQLEIPK RFSQYMKEKL PESIVLRGPS 60 GITWNVELTS KDDALFFQDG WQEFVKDHSL KENDVLIFRY HERSHFDVFM FDGQNLCEKE 120 VSYFINKSAN EKPEDKSPRK SEEHCVEANH TPTHCATDCT SFDNFTTGDG EMMPVKSESY 180 GKRKRTEARS TKAAPKTRFQ QKRGLPNPEV EMELEPVLLM HE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_64.15 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021896354.1 | 1e-163 | B3 domain-containing protein REM16-like, partial | ||||
STRING | evm.model.supercontig_64.15 | 1e-168 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10428 | 23 | 35 | Representative plant | OGRP14915 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-41 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_64.15 |