PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_64.126 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB_related | ||||||||
Protein Properties | Length: 210aa MW: 22585.1 Da PI: 4.3316 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34 | 6.8e-11 | 60 | 101 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W+ +E +ll++a + + + W+ Ia ++g ++ qc+++++ evm.model.supercontig_64.126 60 SWSDQETLLLLEAMEIYNEN-WNDIADHVG-SKSKAQCILHFLR 101 7****************988.*********.**********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 21.33 | 56 | 107 | IPR017884 | SANT domain |
SMART | SM00717 | 4.8E-10 | 57 | 105 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.79E-12 | 58 | 109 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-7 | 58 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.75E-9 | 60 | 102 | No hit | No description |
Pfam | PF00249 | 1.8E-10 | 60 | 102 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MEGTMNKDMS EKVLGVRQFT VDILLCSDCF HEGRNVTGHS SIDFVKVDST KDYGDLDGES 60 WSDQETLLLL EAMEIYNENW NDIADHVGSK SKAQCILHFL RLPMEDGLLE NIEVPSKSKS 120 LSSSNRDDCR GLDANSNGDL PESCVQRTES EVRLPFENSA NPVMALVAFL ASAVGPRVAA 180 ACAHASLAAL SEGDGLATSG QEGSGRSNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2yus_A | 2e-11 | 51 | 111 | 11 | 71 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. {ECO:0000269|PubMed:14682613, ECO:0000269|PubMed:16055636}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_64.126 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021896386.1 | 1e-131 | LOW QUALITY PROTEIN: SWI/SNF complex subunit SWI3C | ||||
Swissprot | Q9XI07 | 1e-76 | SWI3C_ARATH; SWI/SNF complex subunit SWI3C | ||||
TrEMBL | B9H7H8 | 3e-89 | B9H7H8_POPTR; Uncharacterized protein | ||||
STRING | evm.model.supercontig_64.126 | 1e-153 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6464 | 2 | 2 | Representative plant | OGRP3305 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_64.126 |