PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_64.115 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NAC | ||||||||
Protein Properties | Length: 302aa MW: 34025.6 Da PI: 7.8233 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.6 | 2.1e-52 | 10 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtd+elv++yL++k++++++ + +i+e+d+yk++PwdLp ++ +ekewyfFs+rd+ky++g+r+nra+ sg evm.model.supercontig_64.115 10 LPPGFRFHPTDDELVTHYLCRKCASQPIGA-PIIAEIDLYKFDPWDLPDMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSG 89 79*************************999.88***************6666689************************** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg dk++ + + vg+kk Lvfy g+apkgekt+W+mheyrl evm.model.supercontig_64.115 90 YWKATGADKPIGH--PKPVGIKKALVFYAGKAPKGEKTNWIMHEYRL 134 ***********99..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-63 | 6 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.683 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-28 | 11 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MTSPTADLQL PPGFRFHPTD DELVTHYLCR KCASQPIGAP IIAEIDLYKF DPWDLPDMAL 60 YGEKEWYFFS PRDRKYPNGS RPNRAAGSGY WKATGADKPI GHPKPVGIKK ALVFYAGKAP 120 KGEKTNWIMH EYRLADVDRS ARKKNSLRLD DWVLCRIYNK KGSIEKQTPP QVAGNLKQSF 180 WGNDEVEDKK PVPGIGLTGF TNKSALPLAP TVGVKSDLMC FDKSDSVPRL HTDSSCSEHV 240 VSPEFTCEVQ SEPKWKDWRS GLDFPYNYID ATVENGFESQ FSGANQMSPL QDMFMYLQKP 300 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-82 | 6 | 166 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_64.115 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021896479.1 | 0.0 | NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-146 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A1D6YZD6 | 0.0 | A0A1D6YZD6_CARPA; NAC5 | ||||
STRING | evm.model.supercontig_64.115 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-148 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_64.115 |