PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_638.2

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

S1Fa-like

Protein Properties

Length: 89aa MW: 9886.79 Da PI: 10.4018

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_638.2	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	135.3	1.5e-42	22	88	4	70
S1FA 4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 + +e kG+nPGlivllvvgglll+fl+gny+ly+yaqk+lPP+kkkP+skkk+k+eklkqG+++PGe evm.model.supercontig_638.2 22 NDAEIKGFNPGLIVLLVVGGLLLTFLIGNYVLYTYAQKTLPPKKKKPISKKKMKKEKLKQGISAPGE 88 6789**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	3.0E-4	19	88	No hit	No description
Pfam	PF04689	6.0E-40	24	88	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MEEEFVDFSD RVPPNINRVK INDAEIKGFN PGLIVLLVVG GLLLTFLIGN YVLYTYAQKT 60 LPPKKKKPIS KKKMKKEKLK QGISAPGE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_638.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021903755.1	2e-56	DNA-binding protein S1FA-like
Swissprot	Q7XLX6	2e-15	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	W9SCA3	7e-26	W9SCA3_9ROSA; DNA-binding protein S1FA1
STRING	evm.model.supercontig_638.2	8e-56	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2823	27	69
Representative plant	OGRP5095	13	22

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_638.2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]