PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_625.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 248aa MW: 27803.9 Da PI: 10.5142 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.9 | 1.1e-22 | 17 | 62 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+sn qvtfskRr+g++KKA+ELS+LC+ae+a+i+fs+ k++ + evm.model.supercontig_625.4 17 NNESNLQVTFSKRRAGLFKKASELSTLCGAEIAIIVFSPGRKVFSF 62 799************************************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-31 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.39 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-25 | 7 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.06E-32 | 7 | 72 | No hit | No description |
PRINTS | PR00404 | 1.1E-19 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-24 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-19 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-19 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MARKSKGRQK VEMVKMNNES NLQVTFSKRR AGLFKKASEL STLCGAEIAI IVFSPGRKVF 60 SFGNPCVETV LECFVSGNPP QTASGTMKLI EAHRNASVRE LNMQLTQVLN QLEIEKKRGE 120 ELNHMKKANE NKYWWMARKN DLSLTQLQQL KASLDELKKN VAKHAEKIVI HTQNNHHPHP 180 HPHPHLPLPH PHPHHHHPNH PFFLGSSSGG AGLPFETKPA GFSSSIVPFN NPNMMPPKYH 240 GFGQGFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 3e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 3e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 3e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 3e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 3e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 3e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 3e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 3e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 3e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 3e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_625.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238637 | 0.0 | AC238637.1 Carica papaya BAC clone 99B01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021904046.1 | 1e-152 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 7e-57 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A067EEZ4 | 6e-91 | A0A067EEZ4_CITSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_625.4 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-59 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_625.4 |
Publications ? help Back to Top | |||
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