PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_625.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 401aa MW: 44163.4 Da PI: 4.3228 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.9 | 4.8e-17 | 20 | 64 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 + en+ +vtfskRr ++KKA+EL++LC +v +i+fs+ ++ evm.model.supercontig_625.3 20 KMENEASLKVTFSKRRSSLFKKASELCTLCRPDVGLIVFSPGNRA 64 67999999********************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-25 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.161 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.5E-23 | 12 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.96E-29 | 12 | 80 | No hit | No description |
PRINTS | PR00404 | 9.0E-16 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-19 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-16 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-16 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MADERTSSKR KGRQKIELKK MENEASLKVT FSKRRSSLFK KASELCTLCR PDVGLIVFSP 60 GNRAFCYGNP NIDIVIDRFL SIDVRSARDP DNDNDTQQTI NRITKAQDKE EAARKRGKEL 120 KQRRKGLMKE LWYTRSMDKF NLEELEVLDA GMKALWNDVA ELAKKLKKEQ GNSSSAEGSP 180 RDDGMFYSDP AMKALTTLPM PSLPSNPTHE YAPSSTNSTP PLSSFCNIDS GNPNIMMMDN 240 PSNDLGMALD PVDDLEGMPG DLFNNLVMIE SDDPIAALNA GDNPYTMSDA FGNQTATMDI 300 NLSNDPNIRP NEFLNLSTMP HAPNDPISTT SDALNMIRIV PDDSNLDSVF DGFTLEMLFA 360 DPLDDENFIV DNPNEAANGD NPETMSPPLA GNVPGSDQGF * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_625.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ410395 | 0.0 | KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911410.1 | 0.0 | agamous-like MADS-box protein AGL62 | ||||
STRING | evm.model.supercontig_625.3 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-32 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_625.3 |