PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_62.157 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 9959.1 Da PI: 8.8995 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.4 | 3.7e-09 | 12 | 57 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 g+WT+ + + +a + + ++ +W +ar +g g+t++++k ++ evm.model.supercontig_62.157 12 GSWTAKQNKAFEKALAVYDKDtpdRWYNVARAVG-GKTAEEVKRHYE 57 89********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.888 | 9 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 6.4E-8 | 10 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.99E-13 | 12 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 12 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-6 | 12 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.19E-6 | 13 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 90 aa Download sequence Send to blast |
MASSSMSAHG SGSWTAKQNK AFEKALAVYD KDTPDRWYNV ARAVGGKTAE EVKRHYELLV 60 EDVKHIESGH VPFPKYRTTG GSMSEEEKR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-42 | 7 | 89 | 3 | 86 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_62.157 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021896724.1 | 7e-61 | protein RADIALIS-like 1 | ||||
Swissprot | Q58FS3 | 8e-42 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | W9QGR5 | 6e-46 | W9QGR5_9ROSA; DnaJ homolog subfamily C member 2 | ||||
STRING | evm.model.supercontig_62.157 | 3e-60 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39250.1 | 1e-41 | RAD-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_62.157 |
Publications ? help Back to Top | |||
---|---|---|---|
|