PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_62.11
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 296aa    MW: 32186.1 Da    PI: 7.2538
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_62.11genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16.1e-20142190355
                          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                  ++GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+  ++g
  evm.model.supercontig_62.11 142 FRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFNTAEEAARAYDRAAIDFRG 190
                                  8*******.**********82....48**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.698141198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-32141198IPR001471AP2/ERF domain
SMARTSM003802.6E-39141204IPR001471AP2/ERF domain
CDDcd000185.20E-35141198No hitNo description
PRINTSPR003679.1E-12142153IPR001471AP2/ERF domain
PfamPF008474.5E-14142190IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22142199IPR016177DNA-binding domain
PRINTSPR003679.1E-12164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MQSSLKRPRV TGALTSTTAT EIFPTVPIQI PTPIPSPTSF VRLSPEQELS VMVSALKHVI  60
SGTESSTNAT ADAFGVNNSA SFTASGNAVL PPTELDTCQV CRIEGCLGCN FFPPTQQDAA  120
SAVVEGGGNK KGKGKKRVKK NFRGVRQRPW GKWAAEIRDP RRATRVWLGT FNTAEEAARA  180
YDRAAIDFRG PRAKLNFPFV DYTSLPPAEN EQTTSLKKQK QQQETESSKI NDGVFSTEME  240
SGKGKEIFEF GKGKENELLE FGIGELDYIQ EWITMMDFCH GDSSDSATTA NTLSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23140199161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_62.11
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896704.10.0ethylene-responsive transcription factor ERF109-like
TrEMBLA0A0C5AHM38e-80A0A0C5AHM3_BETPL; ERF2 protein
STRINGevm.model.supercontig_62.110.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-44redox responsive transcription factor 1