PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_61.32 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | LBD | ||||||||
Protein Properties | Length: 125aa MW: 14708.6 Da PI: 7.8458 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 107.4 | 1.1e-33 | 20 | 118 | 2 | 100 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 Ca+Ck++rr+C + C +apyfp ++ ++f+n++klFG sn+++l+++ + ++r++a++sl++e+++r +dP++G++gv+ +l evm.model.supercontig_61.32 20 CASCKHQRRRCYERCEMAPYFPISRFSEFQNAQKLFGISNIHRLIHSFESSKRQEAADSLLMEGNMRYNDPMHGCLGVVCEL 101 ********************************************************************************** PP DUF260 84 qqqleqlkaelallkee 100 ++e ++elal++++ evm.model.supercontig_61.32 102 IANIELFEKELALVNQQ 118 *************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.602 | 18 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-31 | 20 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MNNRDENQQD RQKQQQQPTC ASCKHQRRRC YERCEMAPYF PISRFSEFQN AQKLFGISNI 60 HRLIHSFESS KRQEAADSLL MEGNMRYNDP MHGCLGVVCE LIANIELFEK ELALVNQQFH 120 HFRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-20 | 20 | 112 | 12 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-20 | 20 | 112 | 12 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_61.32 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006475549.1 | 1e-44 | LOB domain-containing protein 22-like | ||||
TrEMBL | A0A2H5PIN1 | 9e-44 | A0A2H5PIN1_CITUN; Uncharacterized protein | ||||
TrEMBL | V4UQJ2 | 8e-44 | V4UQJ2_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | evm.model.supercontig_61.32 | 4e-88 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6498 | 26 | 45 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 9e-28 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_61.32 |