PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_61.31 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 24316.6 Da PI: 5.9838 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 77.4 | 2.5e-24 | 1 | 84 | 18 | 101 |
DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +apyfp ++ ++f+n++klFG sn+++l+++l+ ++r++a++sl++e+++r +dPv+G++gv+ +l+ ++e ++elal+++ evm.model.supercontig_61.31 1 MAPYFPISRFSEFQNAQKLFGISNIHRLIHSLESSKRQEAADSLLMEGNMRCNDPVHGCLGVVCELKAKIELFEKELALVNQ 82 59******************************************************************************99 PP DUF260 100 el 101 +l evm.model.supercontig_61.31 83 QL 84 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.408 | 1 | 84 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-21 | 1 | 81 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAPYFPISRF SEFQNAQKLF GISNIHRLIH SLESSKRQEA ADSLLMEGNM RCNDPVHGCL 60 GVVCELKAKI ELFEKELALV NQQLHHFRSQ RDDEQMQQVK GKLVDDELPP ILTLSSLTPQ 120 SDTLDMPPPF LVEHNSDDLE IFHNGYKDPL PTGKELGLEF QGVGNLHHNY PAKLLSYRTG 180 ESSSAAILYN EKLKQEVKDV VSAVPISKKG KEHIEG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-14 | 1 | 87 | 28 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-14 | 1 | 87 | 28 | 114 | LOB family transfactor Ramosa2.1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_61.31 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006475549.1 | 3e-37 | LOB domain-containing protein 22-like | ||||
STRING | evm.model.supercontig_61.31 | 1e-159 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6498 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-20 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_61.31 |