PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_60.75

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

TCP

Protein Properties

Length: 274aa MW: 27973.3 Da PI: 10.3893

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_60.75	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.8	4.6e-39	31	125	2	96
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssa 82 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ s s+ + evm.model.supercontig_60.75 31 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStV--SVSVRG 110 78****************************************************************99977732..222222 PP TCP 83 s.nsssgkaaksaak 96 s + s +++++s+ evm.model.supercontig_60.75 111 SnSTSLSSSSTSSSI 125 202222233333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	37	91	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.7E-33	37	123	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSNSDAPNNG LANGSIVDPQ RQQPPGNGAL AVKKPPSKDR HSKVDGRGRR IRMPIICAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTVSVSVRG SNSTSLSSSS 120 TSSSISSSLD HKPLLGPAPF ILGKRVRTED DAGGKDDGGV TVGPTVGSIV GPTTPGGFWA 180 LPARPDFGQV WSFAAAAPPP EMVMQPGGAA AVSQQQTLFV QQQQHAAAAA AAVAAMGEAS 240 AARVGNYLPG HLNLLASLSG GPGSSGRREE DPR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_60.75

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021896879.1	0.0	transcription factor TCP21
Swissprot	Q9FMX2	2e-97	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A061E220	1e-127	A0A061E220_THECC; TCP family transcription factor
STRING	evm.model.supercontig_60.75	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85
Representative plant	OGRP8514	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-53	TCP family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_60.75