PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_60.39
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HB-other
Protein Properties Length: 961aa    MW: 107370 Da    PI: 5.9007
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_60.39genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.41.6e-05727787154
                                  TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
                     Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                                  +rkRt +++eq+  +e++   ++ +  ++++++  A++l     ++t +q ++W  Nr+a+
  evm.model.supercontig_60.39 727 KRKRTIMNDEQIMLMERALLDEPDMqrNTASIQAWADELshhgsEVTSSQLRNWLNNRKAR 787
                                  79*****************996666115678*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-5712790IPR009057Homeodomain-like
PROSITE profilePS5007110.641724791IPR001356Homeobox domain
SMARTSM003895.2E-4726795IPR001356Homeobox domain
CDDcd000866.09E-4727790No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MRHGKDEACS NEPAIDLISA VKELHGRSSQ ELNRLLRETE NFTIHYIAGK GSSIKIDVEK  60
LAGFLPLHLI AVVMSSDRDE TMFKHLLSGI RLLHSLSDLA PRHSKLEQIL LDDVKVSEQV  120
LDLVFYLLIV LGGYRQEHHC SSALPLLRSA LTAGSLYLLT GCISSQWQNI VQVLLAHPKV  180
DIFMDVAFGA VHTVIRSLQS KLSASHTDHC TELNLAGEHV VNYLCQQGEA SLQCLLAMCQ  240
QKVFRERLVK NKELCGNGGV LFLAQSILKL SIPPKFIESP ILVAAVSRLK AKILSILLHL  300
FEAESVSYLD EVASSGSLDL AKSVAAEVLE LLKTALSKNP NHLQTSDRTY SMGLLQLNAL  360
RLVDILSDDS NFRSYVTVHF TEVLSAIFSL SHGDFLSMWC SGNLPVKEED ATLEYDSFAA  420
TGWILDLFSS SDRANSSTLE FNLTPSNMSQ SSYVHQRTSL FIKIIANLHC FVPNICEEQE  480
RNLFLHKFIG CLRMDPSEVL PSFSFTSSAQ RASIVCRNLR SLLSHAESLI PTFLNEDDLQ  540
LLRIFFDQLQ SLIDSAEGEG TQIQESKYEG SVSWEKFSKL NIGNHYQDAQ STGGCSSSVQ  600
RKEPPNQNNR NANLKEEISE SSAFPEENQI GIRSNQMEVG NDVTKQERRE YKDRCGASGV  660
SRENDRDVQN VETSGSDTSC TRGKNSVDRI VNGEFPKLKE HFKEGGFGGV QEDEKVETVQ  720
DDKQRRKRKR TIMNDEQIML MERALLDEPD MQRNTASIQA WADELSHHGS EVTSSQLRNW  780
LNNRKARLAR ASKDVRPAPE IDNTFPSKQT ARGRQSLSES PSSPGDDNLS LNPTNTKGIN  840
TRSSSRMAPH EMSEVMTQYG NNSAPEFVQC KPGQYFVLVD GQGEEIARGK VHQVQGKWYG  900
RSLEESETCI VDILELKADR RLGLPYPSED TGTNFEEAEM KIGVMRVMWD LNKIYVLQSQ  960
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1721727DKQRRKR
2724729RRKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_60.39
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896885.10.0nodulin homeobox isoform X2
TrEMBLB9S3Y90.0B9S3Y9_RICCO; Uncharacterized protein
STRINGevm.model.supercontig_60.390.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM817967
Representative plantOGRP385357