PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_6.98
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 345aa    MW: 36752.1 Da    PI: 8.4858
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_6.98genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.83.3e-201257147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + 
  evm.model.supercontig_6.98 12 KGPWSPEEDELLQRLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                                79******************************.***********985 PP
2Myb_DNA-binding56.18.7e-1866108347
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  evm.model.supercontig_6.98  66 AFTAEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 108
                                 79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.112762IPR017930Myb domain
SuperFamilySSF466892.95E-329105IPR009057Homeodomain-like
SMARTSM007173.8E-181160IPR001005SANT/Myb domain
PfamPF002495.6E-201257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-271365IPR009057Homeodomain-like
CDDcd001672.95E-171456No hitNo description
SMARTSM007176.9E-1563111IPR001005SANT/Myb domain
PROSITE profilePS5129421.01264113IPR017930Myb domain
CDDcd001673.80E-1266109No hitNo description
Gene3DG3DSA:1.10.10.605.1E-2366112IPR009057Homeodomain-like
PfamPF002494.0E-1566108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASTRKEVDR IKGPWSPEED ELLQRLVQKH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
QVEHRAFTAE EDETIIRAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCASVVPDD  120
GNLLGCGVYD GNLADDNQHQ QPLKRSYSAG SGPPVSTGLY MSPGSPSGSD VSDSSVPVLS  180
SSHVYRPVAR AGGVVPPLET ASSSNDPPTS LSLSLPGVDS GEVSNRINES TQPPAANANS  240
NVITSANVVP FLPVVSREPA GREEVGKGFF GFSTEFMAVM QEMIRSEVRN YMEGLQPQIQ  300
HSNGGVGGGG GGIGGMCMQS LSGGRDGGFR NVVSMNRVGV GKIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-42111123104C-Myb DNA-Binding Domain
1msf_C4e-42111123104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_6.98
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908079.10.0transcription factor MYB44-like
SwissprotO231601e-114MYB73_ARATH; Transcription factor MYB73
TrEMBLB9HH801e-148B9HH80_POPTR; MYB family protein
STRINGevm.model.supercontig_6.980.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-107myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]