PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_6.423 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | LBD | ||||||||
Protein Properties | Length: 255aa MW: 27990.5 Da PI: 7.9604 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.9 | 1.4e-42 | 9 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa+vhk+FGasnv k+l++l++ +reda++sl+yeAear+rdPvyG+vg+i+ evm.model.supercontig_6.423 9 PCAACKFLRRKCTQECVFAPYFPPDQPQKFAYVHKVFGASNVAKILNELNTAHREDAVNSLFYEAEARLRDPVYGCVGLISI 90 7********************************************************************************* PP DUF260 83 lqqqleqlkaelallke 99 lq++l+q +++l +k+ evm.model.supercontig_6.423 91 LQHRLKQIQNNLLIAKK 107 *********99988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.105 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-42 | 9 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSSSSSNSPC AACKFLRRKC TQECVFAPYF PPDQPQKFAY VHKVFGASNV AKILNELNTA 60 HREDAVNSLF YEAEARLRDP VYGCVGLISI LQHRLKQIQN NLLIAKKDLS NYIGLPAMLP 120 TIQAPPGAAF RPQSHLGVGS SPLMNHNMMM PMMDQTSHGG GQTQQQIFEL QGVNDQHHHQ 180 HQEMFRSYDQ QAELVSFSNS GFETSTGSVA TTGFGQKNNS SINNNSNINP LLGSLALGTS 240 GFETSYRIQT HRAD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-49 | 2 | 124 | 4 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-49 | 2 | 124 | 4 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_6.423 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021908106.1 | 0.0 | LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 8e-75 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A2C9URI9 | 2e-84 | A0A2C9URI9_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_6.423 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8008 | 24 | 41 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-70 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_6.423 |
Publications ? help Back to Top | |||
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