PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_6.406

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Dof

Protein Properties

Length: 344aa MW: 36562.1 Da PI: 8.5554

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_6.406	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.2e-39	85	144	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ evm.model.supercontig_6.406 85 ENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNT 144 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-25	85	142	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-32	87	143	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	89	143	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	91	127	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MIQELLGATG LINGGLDHHR HKISFNPTIL EAALSPSSSP SPSSSSSSSS SSSSSGATTT 60 VTTVNNSCST TTTSVTTNSN STTSENQNLR CPRCDSSNTK FCYYNNYNLT QPRHFCKTCR 120 RYWTKGGALR NVPIGGGCRK NKNTTLSTSI TKSNAAAKLK SVVSEIGRSG GLANGFDHDQ 180 LPSTPFLWTA SPHNSHLLAL LRQPQNPNTT TLLSNQVSSV KEEPLGVDPL SQVPSLGLSS 240 SLWKNPSQNQ TQQNGFLSGE EQTSSGIQEL YQRLRSSAST YYNDNSAAVH LSNMACSSSS 300 TSSSSSSYTL ESAPMAPTEL GYTWNNPAFS WADLSTTNGA YPL*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MIQELLGATG LINGGLDHHR HKISFNPTIL EAALSPSSSP SPSSSSSSSS SSSSSGATTT  60
VTTVNNSCST TTTSVTTNSN STTSENQNLR CPRCDSSNTK FCYYNNYNLT QPRHFCKTCR  120
RYWTKGGALR NVPIGGGCRK NKNTTLSTSI TKSNAAAKLK SVVSEIGRSG GLANGFDHDQ  180
LPSTPFLWTA SPHNSHLLAL LRQPQNPNTT TLLSNQVSSV KEEPLGVDPL SQVPSLGLSS  240
SLWKNPSQNQ TQQNGFLSGE EQTSSGIQEL YQRLRSSAST YYNDNSAAVH LSNMACSSSS  300
TSSSSSSYTL ESAPMAPTEL GYTWNNPAFS WADLSTTNGA YPL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_6.406

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021908042.1	0.0	LOW QUALITY PROTEIN: dof zinc finger protein DOF5.7-like
TrEMBL	A0A1R3GFA1	1e-102	A0A1R3GFA1_COCAP; Zinc finger, Dof-type
STRING	evm.model.supercontig_6.406	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16000	9	15
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	7e-34	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_6.406