PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_6.368 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | WOX | ||||||||
Protein Properties | Length: 232aa MW: 26230.3 Da PI: 5.3651 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.7 | 3.1e-21 | 102 | 162 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k+ evm.model.supercontig_6.368 102 RQRWTPTPIQLQILERIFDQgNGTPSKQKIKDITSELsqhgQISETNVYNWFQNRRARSKR 162 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 101.7 | 5.2e-33 | 101 | 164 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq evm.model.supercontig_6.368 101 ARQRWTPTPIQLQILERIFDQGNGTPSKQKIKDITSELSQHGQISETNVYNWFQNRRARSKRKQ 164 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-18 | 95 | 167 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.094 | 98 | 163 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.14E-18 | 99 | 164 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.1E-14 | 100 | 167 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.7E-19 | 102 | 162 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.28E-14 | 102 | 164 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEWDNQPPQQ QQQQENQANQ RDCLGVNMNA NVNGNGVMYV KVMTDEQLET LRKQIAMYAS 60 ICEQLVEMHK NLTAQQDLAG GRLGNLYCDP LMTSGGHKMT ARQRWTPTPI QLQILERIFD 120 QGNGTPSKQK IKDITSELSQ HGQISETNVY NWFQNRRARS KRKQLVAPSN NAESEVETEV 180 ESPNEKKTKP EDLHSQLNSG PRAEDLCFQS PEITSELHFL GALTNPSEYT I* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 163 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00617 | PBM | Transfer from AT4G35550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_6.368 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021908310.1 | 1e-170 | WUSCHEL-related homeobox 13 | ||||
Swissprot | O81788 | 1e-98 | WOX13_ARATH; WUSCHEL-related homeobox 13 | ||||
TrEMBL | A0A0D2M0X0 | 1e-128 | A0A0D2M0X0_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2NBV1 | 1e-129 | A0A0D2NBV1_GOSRA; Uncharacterized protein | ||||
STRING | evm.model.supercontig_6.368 | 1e-174 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4620 | 28 | 51 | Representative plant | OGRP1873 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 9e-96 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_6.368 |
Publications ? help Back to Top | |||
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