PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_6.327 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | SBP | ||||||||
Protein Properties | Length: 193aa MW: 22507.2 Da PI: 8.4889 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 123.6 | 8.7e-39 | 72 | 147 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cq+++C ++l +ak yhrrhkvCe h+kapvvlv+g++qrfCqqCsrfh +sefD+ krsCr+rLa+hnerrrk evm.model.supercontig_6.327 72 CCQADECGKELVDAKAYHRRHKVCERHAKAPVVLVKGVRQRFCQQCSRFHGISEFDNFKRSCRSRLAGHNERRRKL 147 6*************************************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.7E-31 | 70 | 134 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.034 | 70 | 147 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.49E-35 | 71 | 150 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.0E-31 | 73 | 146 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MAKRSFVSEG EEQYNDLETE QESEIEEDEG EEEEEKHQRE KMIIIRVVSG GERRGFQLES 60 NSDNGSGGIY LCCQADECGK ELVDAKAYHR RHKVCERHAK APVVLVKGVR QRFCQQCSRF 120 HGISEFDNFK RSCRSRLAGH NERRRKLLSD QKMQKYVEKS KTSNNTVEHT RFQKSDQVVL 180 QNNRKIKRVR IE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-32 | 64 | 146 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_6.327 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021908036.1 | 1e-138 | squamosa promoter-binding protein 1-like | ||||
Refseq | XP_021908037.1 | 1e-138 | squamosa promoter-binding protein 1-like | ||||
TrEMBL | A0A061DFJ2 | 4e-44 | A0A061DFJ2_THECC; Squamosa promoter-binding protein-like 12 | ||||
STRING | evm.model.supercontig_6.327 | 1e-137 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM868 | 28 | 118 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 6e-34 | squamosa promoter binding protein-like 3 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_6.327 |