PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_6.32 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C2H2 | ||||||||
Protein Properties | Length: 246aa MW: 26928.7 Da PI: 7.0375 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H evm.model.supercontig_6.32 89 YKCKVCNKAFSSYQALGGHKTSH 111 9***********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0088 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.55E-9 | 89 | 111 | No hit | No description |
Pfam | PF13912 | 1.7E-12 | 89 | 113 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.783 | 89 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.7E-4 | 89 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.55E-9 | 147 | 174 | No hit | No description |
PROSITE profile | PS50157 | 8.954 | 152 | 174 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.51 | 152 | 174 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.7E-13 | 152 | 176 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 154 | 174 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MALEMLNSPT SAPPLLRHDH DFEELQYYLH EPWAKRKRTK RPRLENPPTE DEYFAICLLM 60 LAQGTTTTST TTTADDRYNS HAAPPSPSYK CKVCNKAFSS YQALGGHKTS HRSKLTGADH 120 DQSSTNNPAT DISTGYGGVF KTTTFNQSGK IHTCSICYKT FPSGQALGGH KRCHYDATGN 180 QAGGGDFDGD GSCGDDNYNQ VLLEGGTIKF PSSTSQRDFD LNLPAPGFSP PYLLTDQDRK 240 GQRFE* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00118 | ampDAP | Transfer from AT5G67450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_6.32 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021908197.1 | 0.0 | zinc finger protein AZF1 | ||||
TrEMBL | A0A061DHM6 | 6e-65 | A0A061DHM6_THECC; Zinc-finger DNA binding protein, putative | ||||
STRING | evm.model.supercontig_6.32 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3121 | 22 | 64 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67450.1 | 1e-47 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_6.32 |